Ckir005713.2
Basic Information
- Insect
- Collessia kirishimana
- Gene Symbol
- -
- Assembly
- GCA_035078785.1
- Location
- JAWNPV010002997.1:1489-4255[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2e-15 8.7e-12 45.4 0.0 7 45 256 295 255 295 0.97 2 2 7.1e-20 1.9e-16 60.3 0.0 1 43 302 345 302 346 0.97
Sequence Information
- Coding Sequence
- ATGGGATTCCTGGACTTTACACCCGAACCACCAGCACCATCTGCCACACCAGTCACCGTAACGGAACACGTCGATCTATCGTGCAATCCCAGCACCGATACCCGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCTCAGCAAATCCATCGACTCGATCAATCTCCCATGCATTCAATAGCCCATCATCATACCGGCGATGAGAGCAACTCAAATCTTGTGCAGCACATTAAAAGTGAGGTAATTGAGGCCAAACATTTGGCGGCTGCCCAACATGCCCACGCCCAGGCTCATGCCCATCTACaggcccagcaacagcatttgcatgcccagcagcagcagcagctattgGCCCAAAGCcaagcgcagcagcagcagcaacaacagcagcagcagcaacaacatcaccagcaacaacagcagcagcagcagcaacaacaggcagctgctgttcaTGCCCAGCATGCTGCCCATGCAGCGCATGCAGAGATTGGCGGCGGCACTGTCATGGAGATTGATCCGAGCCAGATAAAGCATGAACCGGGCATGATAATAACGCCAGAGATTGTCAACATGATGTCCTCCGGTCATATGGATATGTACAATTCGGACACGAGCGAAGACTCAATGATGATCGCGAATGGTTCACCGCACGATCAAAATGAACCGCATTATACGAATTTGGATCAACAGCACGGCGGCGGGTTGGGGGGCAGCGTTTGTGGCCCCGGCGccggtggtgctggtgAGCGGGCATTGGAGGCGATTCGAGCCGGTAATACGTCTGTACAAAAAGCTAGTGCTGAATTTGGCATACCTACAGGAACACTTTATGGACGCTGCAAACGGGAGGGCATCGAACTGTCGCGTTCAAATCCAACGCCTTGGTCAGAGGATGCCATGAACGAGGCATTAAACTCAGTGCGCGTTGGCCAAATGTCCATCAACCAGGCGGCCATACACTACAACCTGCCCTATAGCTCGCTCTATGGACGCTTCAAGCGTGGCAAGTATGATGTGGTGACCAATACAAGCGGCGTATCGCTGATAAATGCCTCTGGGAACACAACAGGCAGCATTGAGATTATCGAGCATAGTCAAGAGAATTCGttGCATATGTTACAGCAACAGTTCCCGTATAGTCCTTCGCCTCATCCGCCGACAACGCCCCAGCATCATAGTACGCCGCAACATCACAGCACCTCACAGGGTCCACCAACGCCTCAGCATATGCAACAGCATGTTGTGCACATGCAACAGCAATCGCCGCATCAGGCCCATGGCGGCCATCAGCAGcatatgcaacagcaacaggatgTAGTGACGTCGAGCAGCCAGGTGGTGcatagccagcagcagcagcagcagcttcagcagaTCTATCAGCATCATGGCACGCCGGAGCGTAGTTGA
- Protein Sequence
- MGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTGDESNSNLVQHIKSEVIEAKHLAAAQHAHAQAHAHLQAQQQHLHAQQQQQLLAQSQAQQQQQQQQQQQQHHQQQQQQQQQQQAAAVHAQHAAHAAHAEIGGGTVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGGLGGSVCGPGAGGAGERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVTNTSGVSLINASGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTTPQHHSTPQHHSTSQGPPTPQHMQQHVVHMQQQSPHQAHGGHQQHMQQQQDVVTSSSQVVHSQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -