Ckir005434.1
Basic Information
- Insect
- Collessia kirishimana
- Gene Symbol
- -
- Assembly
- GCA_035078785.1
- Location
- JAWNPV010002745.1:3120-4742[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1 2.9e+03 -1.1 0.0 13 24 161 177 155 178 0.70 2 4 9e-18 2.4e-14 53.6 0.0 2 45 354 397 353 397 0.97 3 4 0.028 74 4.0 0.0 27 37 426 436 423 441 0.90 4 4 1.3e-19 3.5e-16 59.4 0.0 2 42 463 503 462 505 0.96
Sequence Information
- Coding Sequence
- ATGGGACACTCGTCGACAGTGATGGAGATACAGCGCGACCTGCACAACGACAAGCAGACCTGCGAGGTCGTTCTGGTGGCCAAAGATGGCGTCACTATGCGCGCCCATATCTTTGTGCTGAGCAACTGCAGTGATCTGATGAGGAACCTACTGGCCAGTGTTCCCATAGCCCCCGGCCTAGATGTCACCATCATACTGCCCGACATCCGTGGCGATCTACTTGAGAGCATGCTGTCGTTCATCTACATGGGCGAGACCAGCCTGCCCTCGGCCTCGCTCACCGAGTTCCTCGAGGCCATCAATCTGCTGGGCATCAAGTCGGCCATCAGCGTTGAATGCTGCCCAACCTCCCAGGTCAGCGCCGAAGCCTCGAGCGCTGACGTTGCTGGCCTAATGGAGGCAGCCAAGTCCATCACCGGCCTGCAAATCGCCCACGCTGAGCTGCTCGAGGAGGACGACGGCGATGCGGTCGACAATGTCATTTTGCCAGACTCCCTAACAGAACAGCAATCCCAGCAGCAGGCGTCGCGGACTCTCGAGTTTCTCGATGTCTATGGCCAGCCAAAGATCACCTACTCGATTGAGCACATGGCCGGCACAACGACGGGAAACCAATTTATACTGACGGAGAACACAGGAAACTACACCATCACCCAGTCATCGCCATCGATTGCCAAGCTAACAGCTCTGGGCGGAGAAGTAACCAGTAAAACAGACGAGCTGATGGACGACGAGGGTGACGGCGAGGCTGATGTAACGGACGAGATCGAGGAACATGACGCCCAACTGATCGAAGAGGAATTCGTGGCCTCCACCGGACCGCTGGTGGAAATGACCTCGGGTACGGATGTGGATTTGGAGGAAGAGGAAGCCATGCACATGCAGGATGAAGAGGTCGAGGAGGACATGCTGGACGTGAAACCAAGTCTAAGCAGCTATGTTAAGAACAGAGGTCCTGGCCGGccgccaaaagcaaaagcttccAAGAAGCCCACAACCTCcaagcgacagcagcagcagcatttcaCCGAGCTCAAGGGCGAGTTCAAGGATGGCATCAACGACGCCCTCGACCTGGCAGCGGAAGCCGTTCTCAACGAGCGACTCAGTCTCCAGAAGGCAGCCGATCGCTATGACATATCAAAGACGGTCTTGTGGCGTCGCGTGCGCACCAATCCCGACTACATGCGCAACACTCGCGAGAAGCCCTCCCTCTCCGAGGCCTATGCCCGCCTCAAGACTGGTGACTCCCTGAAGAGCATCAGCCAGGACCTGAACATACCCATGTCTACGTTGCATCGCCACAAAGTCCGCCTGGCCGCCCAGGGTCGCCTGCCTGACTTTGTTGCCTTTCGCAGGCGCGACAGCATTCCGAAGGACGAACTGCGCGACAAGCTGGCCAAGGCGGTGCATGCCTGCATCAATGAGGGCATGTCGCAGAACCATGCAGCCAATCTCTTCGAGATACCCAAGAGCACGCTCTGGCGACATTTGCAGCGCCGCGTCACAGAAGCCGAGCGCAAGATCAAGGCCGAACAGGATAACGACGATgaggaggaagaagaagaggaggaCGAGGTTTTGGGCAACAGTGATCGTAAGGTAAAGGCGGGCAGATACTGA
- Protein Sequence
- MGHSSTVMEIQRDLHNDKQTCEVVLVAKDGVTMRAHIFVLSNCSDLMRNLLASVPIAPGLDVTIILPDIRGDLLESMLSFIYMGETSLPSASLTEFLEAINLLGIKSAISVECCPTSQVSAEASSADVAGLMEAAKSITGLQIAHAELLEEDDGDAVDNVILPDSLTEQQSQQQASRTLEFLDVYGQPKITYSIEHMAGTTTGNQFILTENTGNYTITQSSPSIAKLTALGGEVTSKTDELMDDEGDGEADVTDEIEEHDAQLIEEEFVASTGPLVEMTSGTDVDLEEEEAMHMQDEEVEEDMLDVKPSLSSYVKNRGPGRPPKAKASKKPTTSKRQQQQHFTELKGEFKDGINDALDLAAEAVLNERLSLQKAADRYDISKTVLWRRVRTNPDYMRNTREKPSLSEAYARLKTGDSLKSISQDLNIPMSTLHRHKVRLAAQGRLPDFVAFRRRDSIPKDELRDKLAKAVHACINEGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKIKAEQDNDDEEEEEEEDEVLGNSDRKVKAGRY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00359561;
- 90% Identity
- iTF_00359561;
- 80% Identity
- iTF_00359561;