Ccro012449.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- nfxl1
- Assembly
- GCA_905220415.1
- Location
- HG991980.1:735408-738560[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1 2.4e+04 -7.8 5.6 15 19 134 138 133 138 0.81 2 20 0.0072 1.7e+02 2.7 0.7 4 10 169 175 168 175 0.97 3 20 1.6e-07 0.0037 17.6 15.9 3 19 186 202 185 202 0.95 4 20 1 2.4e+04 -4.8 2.8 14 18 226 231 226 232 0.56 5 20 3.2e-08 0.00076 19.8 13.2 3 19 239 255 237 255 0.91 6 20 0.43 1e+04 -2.9 1.4 5 10 279 284 279 284 0.93 7 20 1.2e-10 2.8e-06 27.6 14.3 1 19 290 308 290 308 0.99 8 20 1.2e-05 0.3 11.6 18.2 3 19 345 361 337 361 0.86 9 20 1 2.4e+04 -5.3 2.2 5 10 384 389 384 389 0.88 10 20 1.9e-07 0.0046 17.3 15.4 1 18 395 412 395 413 0.97 11 20 5.6e-09 0.00013 22.3 14.3 1 19 422 440 422 440 0.97 12 20 0.00011 2.7 8.5 4.2 9 19 488 498 486 498 0.89 13 20 2.3e-05 0.54 10.7 7.2 1 12 508 518 508 518 0.96 14 20 0.11 2.7e+03 -1.1 3.5 14 19 547 552 547 552 0.88 15 20 0.14 3.4e+03 -1.4 0.1 8 12 568 572 567 572 0.80 16 20 2.7e-06 0.064 13.7 4.8 1 11 588 598 588 599 0.97 17 20 0.4 9.5e+03 -2.8 1.3 15 18 613 616 612 617 0.84 18 20 0.00012 2.9 8.4 15.9 1 18 628 645 628 646 0.83 19 20 0.017 4e+02 1.6 3.3 7 16 673 682 673 683 0.92 20 20 9.1e-08 0.0022 18.4 12.3 1 16 687 701 687 707 0.86
Sequence Information
- Coding Sequence
- ATGGCGCGAAGGTATCGCGATGCGGCTGCAAAATTACAGGAAAATGTTCACAAGCATTTAAAAGAAATGAAAGACCTGTCTTCCTCTGAAGATGAGGAGCCTTACGAGCCGAGCGTCCTGGAAGGTGTATTCCAAAGCTATTGGCGAGGTGGCGGCGACAAACAGATGCTGAATAGAACAAAGAACCTTCTCGAAGAAGCTTTAAGTGGCCGGTCTGTTACGTGTTTAATTTGCATAGGATCTATCAAGAGAGTCGATGCTATATGGACTTGCGATCACTGCTTTTCTTATTTTCATCTTATATGCATTCAAAAATGGGCAAATGACTGTACAAGTCTGCGTTTAGATGAGCCTCAGGCTCCAATCGCCGTGTGTAAGCCAAAGAAAATAGAATGGTGCTGTCCGAAGTGTAGGAACTCATACACTAAAGAGGAAATACCGCGTAAGTACCGATGTTTTTGTGGAAAAACTGATGATCCACCCTATCATCCTTGGTTAGTGCCACACACTTGTGGAGAAGTTTGCGGTAGACGTTTGTCACAAGGTGATAATTGTAAACATAAGTGTTTACTGCTCTGCCATCCTGGTCCATGCCCTCCTTGTCCCCAAACTGTTAACGGCATTTGCTATTGTGGTAAAGAACAGAAGAAAGTAAGATGTAGCACAGCAAAATGGCCCTGTGGCCAGCCATGCCAGAAAAAACTGCTTTGCAAATCTCACAGCTGCAAAAATCTATGCCATGAAGGAGACTGCCCTCCGTGCACATATACTAGTCTACAAAGTTGTCTGTGTGGTTCAGAAACCATAAAAAGACCTTGCTATGACGTCAAATGGCGATGTACAAAAGTTTGTGGCAAACCATATTCTTGTGGTTATCACAAATGTCAAGAAGTATGTCATGCTGGATCTTGTGGCCCTTGCCCCAATTCTGGTTTGATGTCATGTCCATGTGGTGCTAATCAACAGTATGTACAGTGTCCTGACACCATAGAAACATGTTTAGGCACTTGTGGAAAGAAACATGATGATTGTGAACATCTTTGTCCAGAAAAGTGCCACAAAGGTCAATGTCCTCCGTGTCGAGTGCAGATTGAAAAGAAATGTGTTTGTTCAACACACACAAGATCATTACCATGCAGCAAGGAGTTTAAATGTGAGACAAAGTGCAGAGGCATCAGGCCATGTGGAAAGCATTATTGTGCACGTAAATGTTGCAATGGTAGTTGTCCGCCCTGTGAAAAAATATGTGACAAACCTTTACAGTGTGGACGACATAAATGTACCACAATTTGCCATGGAGGACCATGTTATCCGTGCACTAGAGAGTCTAAAATAACATGTAAATGTAAAGAAACATACATTACAGTTCCGTGTGGCAGAGAGAGGAATATCAAACCACCAAAATGTCATTTACCTTGTAAGTTTAAATATAAGTGTGGACACATAGATGAAAATAAACACACCTGCCACTTTGGGGCCTGCCCATCTTGTAAGGCTATTTGCAAAAAACCCTACAGTAAGTGCGGTCACACTTGTGAAGCACTATGTCATGAGTATGTAACTGTGGTTTTCAAACAAGTAGAAAAAGCAGTGATGCCTTGGGAAGTGCAACCACCCAAAGCTAAGGTTGTCGCGTTGGACTGTCCGCCGTGTAAAATTCCTGTCCCAGTCGTTTGTTTCGGTGAACACGACACGGAGATGCAGCCGTGTCACTCGGCGGCGCGACGGTGTTGCGGCAGAGAATGCGGTAAAGATCTCGCCTGCGGTAATCATAAGTGTTCACTTTTATGCCACTTGTACAGTTCAGATCCTAATTATCCAAATGTGCCTTTTACTTGCAAACCGTGTAATAGAGAGTGTATGAAGCCGCGGCCCGAAAAATGTTCGCATAAATGTTCAAAACGTCAATGTCATCCTGGATCGTGTCCTCCGTGTGAGGTGAAAGAGTTTATCAAATGCCACTGTGGACTCACAGAACTATACTTAGCGTGTCACGAATTTATAATCGCCACAGATGAACAGTTATGTTGCAAACAACAGTGTCCAAAAATACTAGATTGTGGACATAAATGTAAGAGTATATGCCACAAAGGTCCTTGTGGAGTTAATCAAGTGTGCACGAAAAAGACGAAAGTATACTGCTCATGTGGAAATTTGAAGAAAGAAGCACCATGCAATCTTGTTAGAAATTCTGAAGTCAGTATAGCTTGTGATGACACATGCCAGGCTAAAAAACTCGCGGCTCTTGCTGAGAAAGAAAAAGAAGAAAAGAGACAGAAAGAGTTGGAAGAAGAGAGAAACAGGAGAGAGCTAGCGGAGTATGAATGGAAAATAAGCGGGAAAAAGAAGAAATACAAAGAGAAGAAAGTTGTTGTTAATCAAGACAACAGAAACTTTGTTCAGAAATATAGGGTTCCTATTTTGTCATTGGTAGTTTTAATTATTTCAGTATGTATTTTTATACATCTTAGTAATTGA
- Protein Sequence
- MARRYRDAAAKLQENVHKHLKEMKDLSSSEDEEPYEPSVLEGVFQSYWRGGGDKQMLNRTKNLLEEALSGRSVTCLICIGSIKRVDAIWTCDHCFSYFHLICIQKWANDCTSLRLDEPQAPIAVCKPKKIEWCCPKCRNSYTKEEIPRKYRCFCGKTDDPPYHPWLVPHTCGEVCGRRLSQGDNCKHKCLLLCHPGPCPPCPQTVNGICYCGKEQKKVRCSTAKWPCGQPCQKKLLCKSHSCKNLCHEGDCPPCTYTSLQSCLCGSETIKRPCYDVKWRCTKVCGKPYSCGYHKCQEVCHAGSCGPCPNSGLMSCPCGANQQYVQCPDTIETCLGTCGKKHDDCEHLCPEKCHKGQCPPCRVQIEKKCVCSTHTRSLPCSKEFKCETKCRGIRPCGKHYCARKCCNGSCPPCEKICDKPLQCGRHKCTTICHGGPCYPCTRESKITCKCKETYITVPCGRERNIKPPKCHLPCKFKYKCGHIDENKHTCHFGACPSCKAICKKPYSKCGHTCEALCHEYVTVVFKQVEKAVMPWEVQPPKAKVVALDCPPCKIPVPVVCFGEHDTEMQPCHSAARRCCGRECGKDLACGNHKCSLLCHLYSSDPNYPNVPFTCKPCNRECMKPRPEKCSHKCSKRQCHPGSCPPCEVKEFIKCHCGLTELYLACHEFIIATDEQLCCKQQCPKILDCGHKCKSICHKGPCGVNQVCTKKTKVYCSCGNLKKEAPCNLVRNSEVSIACDDTCQAKKLAALAEKEKEEKRQKELEEERNRRELAEYEWKISGKKKKYKEKKVVVNQDNRNFVQKYRVPILSLVVLIISVCIFIHLSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01562442; iTF_00358205;
- 90% Identity
- iTF_01562442; iTF_00358205;
- 80% Identity
- -