Basic Information

Insect: Colias croceus
Gene Symbol: -
Assembly: GCA_905220415.1
Location: HG991988.1:3456111-3469056[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.95 75 4.5 2.0 1 23 255 278 255 278 0.97

2 9 6.6 5.3e+02 1.8 0.1 1 8 285 292 285 306 0.84

3 9 2.4 1.9e+02 3.2 0.4 2 11 338 347 337 351 0.85

4 9 0.0036 0.29 12.1 4.4 1 19 353 371 353 376 0.91

5 9 0.063 5 8.2 2.5 2 22 385 405 384 409 0.91

6 9 0.00026 0.021 15.7 2.2 1 23 414 437 414 437 0.95

7 9 2.1 1.7e+02 3.4 0.6 2 23 444 466 444 466 0.90

8 9 6.4e-07 5.1e-05 23.9 1.1 2 23 476 497 475 497 0.97

9 9 0.00034 0.027 15.3 1.6 1 23 503 526 503 526 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.95	75	4.5	2.0	1	23	255	278	255	278	0.97
2	9	6.6	5.3e+02	1.8	0.1	1	8	285	292	285	306	0.84
3	9	2.4	1.9e+02	3.2	0.4	2	11	338	347	337	351	0.85
4	9	0.0036	0.29	12.1	4.4	1	19	353	371	353	376	0.91
5	9	0.063	5	8.2	2.5	2	22	385	405	384	409	0.91
6	9	0.00026	0.021	15.7	2.2	1	23	414	437	414	437	0.95
7	9	2.1	1.7e+02	3.4	0.6	2	23	444	466	444	466	0.90
8	9	6.4e-07	5.1e-05	23.9	1.1	2	23	476	497	475	497	0.97
9	9	0.00034	0.027	15.3	1.6	1	23	503	526	503	526	0.95

Sequence Information

Coding Sequence: ATGACAAATTATATAAAACCTATCGTTTTCTGCGAGGGTTGTTTGTCCACGGATAGAAAACTAACAGATGTCGGAGAATTTTATGATATTTACGTTAATCTTTTTATTGAAGCTTCCAGCAAGCTATCAAAAAACCCTCTATTCTGCTGGGAATGTAATGCTGTATTACGAACAATACACAAGTTTCGAGAGAGAGTTCAACAGGCCAATAGTTACTTAAATGAAGGCTTGAATAAGTTTAAAAGAGTAAAAATCTGCTTATCAACATTATCTACCTCAAACATATCAAATAATATCATATATGCTGTACATAGTGAAGAAAATGACAATAATTTTAAAGAAGAAGACATAGCAGCTGATGATAATTTTGATAATGTATCAACAGTAGACGAACCGTTAATCGTACCAATTGAATTTAAAACTGAGAAAAGTGACAATTCCGACTTCGAAAATGACTTTTCTATCGAAACAGACTATATAAATATAGAAAACATAGACAAAGACAAAAAATTGCATTTGGAAAAGCAGGACACAGACAATATAGATGATGACAAAAAATTGCTTTTGGAAGAACAAGACATAGACAAAAAGAAAAGAAAACGTCCAAAATCATATATTAATGTGAGATACACTGTGAAGGAATATAGTAAAGAGGAAATGATAGAAATGCGTAAAAAATGCGAGAGAGTTTTTATGGACGATTCTGAGATGGCGTTATGGCGGGAAAAAGCGAAATTGGCGCATAATTACAGAACAATGGCATATAAATGTGAAACTTGTATATCTGGGTTTGCTAAGAAGCAATATTATGATAAGCATGTTAGGAGATTCCATTCTAAGGGTAGTGGCGATTATGAGTGTTCGATTTGCAAGCAGCGAATCTTGAGTGTTAGAAAACTCTCACACATGGACATGCATACAACTAAATATATATGCTGTGTGTGTGGTGTGGAATGTCATCCGTCATATAATTTGGATTGTCACTTGAATTCAACTCACAAACGTGTGGTGCAATGTAAGAAGTGCAATTTGCAGTTTAAATTACGTCACACAGAGCACAGATGCAAGATATGTGACAAATTATACTATTCACAACACACACTGAAAAGGCACAACTTTGCGGTTCATGTTAAATCAATCTCGGAAGAAACTTATTGCGTTGAATGCAATCTTCATTTTAATAATGAAATTTTGTTGAAACATCACTTGACGACGAGCACGAAGCATGTGCAGAAGAGATTTCCATGTACAGAGTGTGATAAAGTGTATCATAAGAGGACAACATTGAATAATCATTATAATTTAGTACATCTGCAGAAGACTAAAAACTACTGTGAACTATGTGACCGATATTTCCTAACAGGATATCGCCTCAGAGATCACAAGGCAACCACGCACGATCGTTTGCCAAAGCCAAAGACGAAAATGTGTTCTATATGTGGAAGAGCTTTTCAAACAAATCGCCTTCTACAGAATCACATGAGGACACATACCGGTGAACGGCCTTTCCACTGCGAATTCTGTACGGCGAGCTTCACACAGAAGTACGCGCTGGTCTCTCATACTAGGGCGATTCATAAAGTGCATTAA
Protein Sequence: MTNYIKPIVFCEGCLSTDRKLTDVGEFYDIYVNLFIEASSKLSKNPLFCWECNAVLRTIHKFRERVQQANSYLNEGLNKFKRVKICLSTLSTSNISNNIIYAVHSEENDNNFKEEDIAADDNFDNVSTVDEPLIVPIEFKTEKSDNSDFENDFSIETDYINIENIDKDKKLHLEKQDTDNIDDDKKLLLEEQDIDKKKRKRPKSYINVRYTVKEYSKEEMIEMRKKCERVFMDDSEMALWREKAKLAHNYRTMAYKCETCISGFAKKQYYDKHVRRFHSKGSGDYECSICKQRILSVRKLSHMDMHTTKYICCVCGVECHPSYNLDCHLNSTHKRVVQCKKCNLQFKLRHTEHRCKICDKLYYSQHTLKRHNFAVHVKSISEETYCVECNLHFNNEILLKHHLTTSTKHVQKRFPCTECDKVYHKRTTLNNHYNLVHLQKTKNYCELCDRYFLTGYRLRDHKATTHDRLPKPKTKMCSICGRAFQTNRLLQNHMRTHTGERPFHCEFCTASFTQKYALVSHTRAIHKVH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -