Basic Information

Insect: Colias croceus
Gene Symbol: -
Assembly: GCA_905220415.1
Location: HG991986.1:4089330-4112432[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.31 24 6.0 0.7 2 19 439 456 438 460 0.89

2 16 0.0011 0.084 13.8 0.0 1 23 470 493 470 493 0.95

3 16 0.03 2.4 9.2 3.3 1 21 605 625 605 626 0.94

4 16 0.027 2.1 9.3 3.6 2 23 684 705 683 705 0.95

5 16 3.2 2.5e+02 2.8 3.9 1 23 716 739 716 739 0.91

6 16 0.00025 0.02 15.7 1.4 2 23 746 769 745 769 0.97

7 16 0.06 4.7 8.3 0.2 1 23 775 797 775 797 0.93

8 16 0.0012 0.098 13.5 3.1 1 23 803 825 803 825 0.98

9 16 0.24 19 6.4 0.1 2 23 835 856 835 856 0.95

10 16 0.061 4.9 8.2 0.2 1 23 927 949 927 949 0.97

11 16 1.3 1e+02 4.1 6.3 1 23 956 978 956 978 0.95

12 16 0.0012 0.093 13.6 1.8 1 23 1009 1032 1009 1032 0.95

13 16 0.0034 0.27 12.2 0.7 1 23 1039 1062 1039 1062 0.97

14 16 0.0083 0.65 11.0 0.1 2 23 1084 1106 1083 1106 0.95

15 16 0.043 3.4 8.7 2.0 2 23 1131 1153 1130 1153 0.95

16 16 0.56 44 5.2 0.2 3 14 1171 1182 1170 1184 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.31	24	6.0	0.7	2	19	439	456	438	460	0.89
2	16	0.0011	0.084	13.8	0.0	1	23	470	493	470	493	0.95
3	16	0.03	2.4	9.2	3.3	1	21	605	625	605	626	0.94
4	16	0.027	2.1	9.3	3.6	2	23	684	705	683	705	0.95
5	16	3.2	2.5e+02	2.8	3.9	1	23	716	739	716	739	0.91
6	16	0.00025	0.02	15.7	1.4	2	23	746	769	745	769	0.97
7	16	0.06	4.7	8.3	0.2	1	23	775	797	775	797	0.93
8	16	0.0012	0.098	13.5	3.1	1	23	803	825	803	825	0.98
9	16	0.24	19	6.4	0.1	2	23	835	856	835	856	0.95
10	16	0.061	4.9	8.2	0.2	1	23	927	949	927	949	0.97
11	16	1.3	1e+02	4.1	6.3	1	23	956	978	956	978	0.95
12	16	0.0012	0.093	13.6	1.8	1	23	1009	1032	1009	1032	0.95
13	16	0.0034	0.27	12.2	0.7	1	23	1039	1062	1039	1062	0.97
14	16	0.0083	0.65	11.0	0.1	2	23	1084	1106	1083	1106	0.95
15	16	0.043	3.4	8.7	2.0	2	23	1131	1153	1130	1153	0.95
16	16	0.56	44	5.2	0.2	3	14	1171	1182	1170	1184	0.92

Sequence Information

Coding Sequence: ATGGCGGACCCACCTCCTTTAGTGCTTTGTATGGATAATATAAATGGGGATGAAGTAGCGTTAAAAATCGAGCCGCATGATGATTTTCGACTGTTCTTGGATAAGGCTAAGTCAATGTTAGGCTTTGAGATCGACATAAACTCCATAACTGGAAACCAACCTGTATCCTTAGACGATAATATCTACCAATTCCTTCTAAACGCTGAACAAAATATAGCCAATTCTGGCTTACGACATACGTACGACACATTAGATTCAAATACAAATGACGACTTAGTATATGTACTCGATGATGGAACGCAAATTAGGGCTTCCCTGATCCATTTTGACAATGAAGATCCTCTAATCGATCTAACGTTAGAAAAAATACCTTTTGTCAAATATAAAGACGATCCTGACGAACTTACTGATATCAATAATGATAATATAAGTATTAAGGATGTGAATATTGAGAGTCCTGTGTCCAGATGGTCTAGTAATGCATCTAGTCCTAAAAGTTTTGTTAACAGCCTACCATTTAAACTAGTATGTAACAATACATCCAATTTTGAAGCTCAGTTCACTAAATATCTGGAATCTGGTGCTAAAACGTACACTATGTTAAACCCAGTCAATAGAAACGTATCTCCGACAAGTATTATTAAAGATAACTTTAAAAAGTATGACGATGATTGTCCAAAAAGTAATATATTTACACGAGAAGATATACTGAATATGTTTAAAGATTCTCCAGTTAACTCTCTACCGTACGATAAAAGTATAAATTATGATAAACGAAAGCATGTACGTAAAACTGATCCAACGAGAATTGTTCACAAGAATTGGTATAGATCTAACTTAGATTCTGCACAAAACCAGGATTGTTGTATTTGCGGAAGAATTGTTGAGAACAATCTAGAAAAAATGTATTTATTCGATAATGAAGACCAAAGAATACACAGATGTTCGCCGCAGAAAAGAATGTCAATGCAGTTGAAAATTATTTGCGAACAATGCTTGGCTGATAATTTTAAACTGTGCCTTGTGAAAAGTCCCAATGAAGCCTTAAACAGTGACGAATATTTGGTCATAAAGAACAACCAGCAATACATATTTCAAAATGTAACGGATATAGATTTGAAACGGCGTTGCTTCGACCATTCCAAAGACAAAATAGAGACCACAGACTCAATTCCCGCGCAAGAGAGTTCTAGTGACGTAGAGATTATAGAACCGGATATGGAGATAGATAAGGTCATAGACAATTTGGAGGAAGCTGATGAAGATGTTAAGGAGTTTTTAGGGAAATACCAGAATGATAAAATTTATGAATTGAAATGCAGGTTTTGCGATAAAATATTTGCGACACTTGAAGAAGTTATTGATCACTGCGAGGAACATAAGCACGATTTGTCCGAAGGGATTGTATATCCTTGTCCTTTGTGTGATTATGGATATGCCAATTCAAAATGGTTGAAAGGTCATTTAAAAGCAGCTCACGATAAACCGAAAGAAGGAGATGCTTTAGAAGAAGTTAAAAAAGAGGAAAATGCAAATTCCTCGGATGAATCGTCGCCTGTGGCCAAAAGAACGAGAAGTGCTGTGAAAAAAGAAAACGATACAGATGCCAAAGACGATGAAAATAATACAATAATGACAACTGGGGTACCAACAGTTGAACTAAAAACCGAAGTGAAGCAAGAAGCCCTAGACAGTGATGATGAAGACATCTGGATAGTTCACACCGGTGATGATGCGCAGGAACAACAGCTGCAGAACTTGCTTAGACTTAACGAGACTGAGAGCACACAAAAACATCAAGCTTTGACAAAACATAAATGTTTCAACTGCAGTCGAATCTTCCCAACCGCGGAAAGTTTAACTACCCACAAATGTCGTAAACGAGGTAGGAAACGAAAATCTCCGACTGGACAATCTGGATTATATGTGCCCACTAAAGAGGACTTTTTGAAGAGAGCCCAAGGCAGACCTAGACAAGCTAGCAGCACTAACGATAGCTTATTGAAAGTACGAAAGAAGAGAAGCCGCGACGACAGTCCGCAAATAGTGACGTGCCACAATTGTAACGAATCTTTCTCTTCTAAAGTGAGATTGAAGTTTCATATGCAGTTCCACTCCCCCAGTTCGCTGCTCAAAGCCGGCAATTACCACTGCTCCGCTTGTCCTTCACACTTTTCAAATGAAGCAGAACTATTCGATCACGTGCACTTTAGACATTCGAGGCAAAGAAGATGGCAGTGTCCGCTCACTGGCTGCGGCAAGACTTTTCATTTGAGGGCAACATTAACAAAGCATAGTCGCACGCACACAGACACGCGGCGGTACGTGTGTGTGACGTGCGGGAAGCGGTTTCTCGACAAACAGACGTTGGACGAACATGGCGTTACACATTTACAGATAAAACCGTACCAATGCCACATTTGCCTGAAACAACTGACCCGCCGTTCCCGACTGCGCATGCACCTACGTGCACACGAAGAAGCAAGTCCGAGGCTCTTGCGTGTGTGCGTTAATTGTTCTAGAGCCTTCCGTGACGTGGAGGAGGCTATGGAGCACATCACAAAACACGCGGAGTGTGTTGTGGCGGTTGCGGGCGAAGCGAAGCGGCACGAAGCGGGACAACTGTCGCCCACCAGCGGGCTGGTTACACGTGCACATACACAATGTTTCACGAAGCCAATACCACGCGAAGTGTCCACCGACGAGAGTCGAACCCTGCTCCACGGGTTGGACGCTACAGCGCTAACTATTGTGCGTGTGGTGCGGGTTGATAAGGCTTTCCGATGCGAGTATTGTGAGGACGTGTTCTACTTGGAAGAAGCACTCAACTCGCACAGGTCAATACACAAGGGTGTGAAGAATCCGTTTGTCTGTCACATTTGTAAAGTCAGCTTTGCTACGTATTCCAGATGTACAACACATAAAACAACACACGGCTTTTACAAGCGCAATTTGACCGACTGCAACAAGGAGGGTGCTAGTTCGAACATATTGGGTTATGGCGGCTTTCCCGTTGTCAAGCATTTTTTGTGCGAGGATTGTGGCCGTTCCTACCTCCATTGGACATATTTACAAGTACACAGGCGTATGAAGCATGCAAACGAAAACTTTTTGTTCAAATGCAATCAGTGTGAATTGACCTTTCCCAATAGTTGGAGTGTCGCATACCACAGGAAGAAAGTGCACGGCAAGACTTGTCAAGAAGATGGCGGCACTACTAAAATTGCTAGACAGGATTATTACAGAATACCATGCCGCGACTGTGACGAAGTTTTGCCGAACAAGATTGAGCTTTATAAGCATAGACAGAAGATGCACTGCGATGAGTCGCTTGAAAATGAAGGATTTGAAGCGAATATACCAGAAACAATAATAGGCAAGGATACAACAGTGTGCTCGAAATGTGGACACAATTTGCACAACGCGAACGCTCTGCAGAAACATTTGAAAGAAGTGCACGGCGTAAACGCGTGTGGTGCTAACAGGAATCGGGACGAAAGGAACGTAGCTTGTGACCTGTGTGGAGTTAGCTTTAGACGCAGTTCGCGAACGAACGCAGCGGGAACGCGAGCGAAGCGATGTGCTAGATGTAGACTGCGAAACGATTTGAGACATTTAGCCGCAAGGAAACTTGTTGTTATCGAGGTGCAAGGTTTGAATCCCAGTCCGGAGCAAGTTTTACAACATTTGGTTCAAAATAACATCAACCGGGATAAAGTTATTGACGTATCTGTTGTTTCTTTTGCTAAGATGGTGTGGATTAAATTTAAGCGTGTGTGCTGTATGGTGGTGGAATTTAGCAGCAGACCGCTGTCTACTGCTAAATTGGAATGGATCGCTATCCAAACAGTTCATCAGAGATGA
Protein Sequence: MADPPPLVLCMDNINGDEVALKIEPHDDFRLFLDKAKSMLGFEIDINSITGNQPVSLDDNIYQFLLNAEQNIANSGLRHTYDTLDSNTNDDLVYVLDDGTQIRASLIHFDNEDPLIDLTLEKIPFVKYKDDPDELTDINNDNISIKDVNIESPVSRWSSNASSPKSFVNSLPFKLVCNNTSNFEAQFTKYLESGAKTYTMLNPVNRNVSPTSIIKDNFKKYDDDCPKSNIFTREDILNMFKDSPVNSLPYDKSINYDKRKHVRKTDPTRIVHKNWYRSNLDSAQNQDCCICGRIVENNLEKMYLFDNEDQRIHRCSPQKRMSMQLKIICEQCLADNFKLCLVKSPNEALNSDEYLVIKNNQQYIFQNVTDIDLKRRCFDHSKDKIETTDSIPAQESSSDVEIIEPDMEIDKVIDNLEEADEDVKEFLGKYQNDKIYELKCRFCDKIFATLEEVIDHCEEHKHDLSEGIVYPCPLCDYGYANSKWLKGHLKAAHDKPKEGDALEEVKKEENANSSDESSPVAKRTRSAVKKENDTDAKDDENNTIMTTGVPTVELKTEVKQEALDSDDEDIWIVHTGDDAQEQQLQNLLRLNETESTQKHQALTKHKCFNCSRIFPTAESLTTHKCRKRGRKRKSPTGQSGLYVPTKEDFLKRAQGRPRQASSTNDSLLKVRKKRSRDDSPQIVTCHNCNESFSSKVRLKFHMQFHSPSSLLKAGNYHCSACPSHFSNEAELFDHVHFRHSRQRRWQCPLTGCGKTFHLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPYQCHICLKQLTRRSRLRMHLRAHEEASPRLLRVCVNCSRAFRDVEEAMEHITKHAECVVAVAGEAKRHEAGQLSPTSGLVTRAHTQCFTKPIPREVSTDESRTLLHGLDATALTIVRVVRVDKAFRCEYCEDVFYLEEALNSHRSIHKGVKNPFVCHICKVSFATYSRCTTHKTTHGFYKRNLTDCNKEGASSNILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLFKCNQCELTFPNSWSVAYHRKKVHGKTCQEDGGTTKIARQDYYRIPCRDCDEVLPNKIELYKHRQKMHCDESLENEGFEANIPETIIGKDTTVCSKCGHNLHNANALQKHLKEVHGVNACGANRNRDERNVACDLCGVSFRRSSRTNAAGTRAKRCARCRLRNDLRHLAARKLVVIEVQGLNPSPEQVLQHLVQNNINRDKVIDVSVVSFAKMVWIKFKRVCCMVVEFSSRPLSTAKLEWIAIQTVHQR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -