Basic Information

Insect: Colias croceus
Gene Symbol: -
Assembly: GCA_905220415.1
Location: HG991968.1:1535223-1544804[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2 1.6e+02 3.4 0.3 2 23 6 27 5 27 0.96

2 15 0.03 2.3 9.2 2.9 1 19 1034 1052 1034 1054 0.97

3 15 2.8e-06 0.00022 21.9 1.8 2 23 1148 1169 1147 1169 0.97

4 15 2.1e-05 0.0016 19.1 1.7 1 23 1175 1197 1175 1197 0.99

5 15 0.0079 0.63 11.0 2.5 2 23 1204 1225 1203 1226 0.95

6 15 1.1 86 4.3 2.9 5 23 1239 1257 1238 1257 0.96

7 15 0.014 1.1 10.3 0.9 3 23 1264 1285 1263 1285 0.96

8 15 0.12 9.5 7.3 0.5 3 23 1321 1342 1320 1342 0.91

9 15 0.12 9.5 7.3 0.5 3 23 1429 1450 1428 1450 0.91

10 15 0.0094 0.74 10.8 0.2 2 23 1467 1487 1466 1487 0.97

11 15 0.0012 0.093 13.6 0.4 1 20 1493 1512 1493 1515 0.89

12 15 0.0075 0.6 11.1 0.2 1 23 1523 1545 1523 1545 0.98

13 15 0.0056 0.44 11.5 7.2 1 23 1551 1573 1551 1573 0.98

14 15 6.5e-06 0.00051 20.7 1.3 1 23 1579 1603 1579 1603 0.98

15 15 0.0011 0.086 13.7 4.2 1 23 1609 1631 1609 1632 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2	1.6e+02	3.4	0.3	2	23	6	27	5	27	0.96
2	15	0.03	2.3	9.2	2.9	1	19	1034	1052	1034	1054	0.97
3	15	2.8e-06	0.00022	21.9	1.8	2	23	1148	1169	1147	1169	0.97
4	15	2.1e-05	0.0016	19.1	1.7	1	23	1175	1197	1175	1197	0.99
5	15	0.0079	0.63	11.0	2.5	2	23	1204	1225	1203	1226	0.95
6	15	1.1	86	4.3	2.9	5	23	1239	1257	1238	1257	0.96
7	15	0.014	1.1	10.3	0.9	3	23	1264	1285	1263	1285	0.96
8	15	0.12	9.5	7.3	0.5	3	23	1321	1342	1320	1342	0.91
9	15	0.12	9.5	7.3	0.5	3	23	1429	1450	1428	1450	0.91
10	15	0.0094	0.74	10.8	0.2	2	23	1467	1487	1466	1487	0.97
11	15	0.0012	0.093	13.6	0.4	1	20	1493	1512	1493	1515	0.89
12	15	0.0075	0.6	11.1	0.2	1	23	1523	1545	1523	1545	0.98
13	15	0.0056	0.44	11.5	7.2	1	23	1551	1573	1551	1573	0.98
14	15	6.5e-06	0.00051	20.7	1.3	1	23	1579	1603	1579	1603	0.98
15	15	0.0011	0.086	13.7	4.2	1	23	1609	1631	1609	1632	0.95

Sequence Information

Coding Sequence: ATGGATCAAAGAGTGCAATGTCCCGTTTGTACTCTGTTTCTGCACAGTGGGATGTCTTTGGAGTCTCACTTGGATACACATCCTAAAGATCAAGTGATTAAAGCACTTTGCAGTTTGTCTGCAAAAAATGTTGGAAGCAGAACTCCAACACCTTCGACTTCGGAACGTTCATTTAGAAGTAGAACACCTGCTACTGATGACAGTGTCAGATGGTCGTCATCTCGCCGGAGCGCAGAAAGTGGTTACTGGAGGAGAACACCTAGTAGAAATAAATCATCATCATCTTCCAATATTTCACGGAATGTCACTCCTGATATTAGAATTGGTGGTATTAATTTTGAAAATAATGCTGTCAACAGCTGTGGGGAATTTTCTGAATGTGCAGTGAAATCAACCAAGTCAGCACCAGTATATACAACCAATGTGGAGCCACCTCAAGCTGACTTTAACACACAGTTTCCATTCTATCCTGATAGTCAAGATGATCCAGAGATAAAATATTCACGTAGCACAGATTATAGCGTAGTAGATAATAGTAACCCTCTTTTTCCATATAACCTCCCTGTTATAGGACCTACTATGAAAATGCCACCAACTATGTTAACACCTCATAATAAAAGAGCTAATAATATAGTTAAATTGGTCCCAAAGCAAAATAACATGTTAATGAAAAATATAGGAGGGCTACGTTACATAACTCCGAATGTTAAACCATATCCAGTAATGATGTCTGCTGCTCCATCTTTTATGCAAAAAAATGTTCAAACCAATATGATGATGGCTGGAAATATGCCTGTTCCTGACATGTTAGAACCGAAAGCAGGGGGACCTATGCCTGCTCAATTCAACCAAATGTCTGCCGACAGTCTCTCCTCTGGTACAACTGTTGTCACACAAAATTCTCAAATAATTTATAGGGAGATGGTGCACAATATGGATGGTAAACCATACATTTCAAACATGCCTCACATGTTGAGCACACAGGAAAATATGGCGCAGAGTAGTTCAATGTATCAAAATGTGATGGTTGTAGATCAATTTGGAAACGCATCATGTATGTATAACACTCCACCTCCTTTAATACCTAAGCCCTGTAATCCACCCATGTTTGGTAGTAATTTGGCTCATTTACCAAATACAATGGATAAATCTATACCTAATATAGTAAATGATGCTAATAAAACTTTAATAATTGAAGTAAGTCCTATGTTGTCAACAAACGAAGTAGATATTCCCAAAACAAGTGCAGACACATTGTCCTCGCAATCAGAGAGTAATTCTCAGAAAGCTATAGACACAGACACATCTGAAACAAAAATCTCAACTGCAGGGTCTTGTAAAGGGCTCAAAATTCTAAGCAATATTAAAGTTGAAGTTCCAGTACAGCATCATAAAAACATGATCAATACAGTCATGGATTTAACGGGACCTGGAGATTCTGGTTACATCCAGCGTCCGTCTTCACCAGAAAAAATCCTACCAGATTTAGATGAAAAGCCTTCAAACATATCAGATGACTGTACTCAGGCATCAAATTCAAGTGGGGACAATGGAGCTCCTCATAGCTTTTCTGTGATAAAGAATGTTGGCAATCCGCAAACATGTAAAGAATTTACAGTAAAACAAACTACTGTAAAACTTGACATTGAATTTTCTGATAGTTGTCCTGTGCCTGATCTTATATGTAACGAAAAGCCTTCTATTTCACCTTGTAGTGAATTGTTAGACCATGGAGAGAATTCCATGGATCGTTGCTCACCAATAACTAAAAGTGAACCATCACCTAAACCAGAGAACTGTTCTAAAAATGAAGCAGAAAATGATTATGTTGTACCTGCTAAACGAAAAGCTTCAGTTAATATTGAATCGCTATCACCTAAGTCAGGATCAACTTCAAAGCAAGAGCTTGCTGCAAAAAATGGCACTCCATCACCTAAACCCCAACCTTCACCTGTGCTGAGAACAGAGAGTAGTGAAAACAATGATTCAAGTACTAATAGTGAGAATAAGAAGGCCACAAAAACAAAAAACTTTCCATTAAGACTCAACAATATATTTGTAAAAAAGCACAAAAAAGTTTTAAAAATAAAAAATCTTAAACCCCTTCAATCTGAGACAGATCCTCAACCATCGTCATCATCCAAGGCTGAGAATTTTTTTGGTGACAAACCTCAAAATTTTCAAAATGTTAAAGATATAGTTGATATTCCTTTAACTGTTGGAAAAACAGAAATTAATGATAATAAAAAGGAATTTGATGCAGACACTGAGGAACAGTCTATGGACATTGAACCCATAGCACCATCTACTATAAGCCATTCCAATAATTATACTACCACAATTGATTTAGTGCACATTAAAGAGGAAGCAAATTCTAGTAACGAATTTACTAATGAGATGGATAGATCTAATCGTGACCTTACTCCTCTAGAAAGTTTACGTCCAATCAATGTAATTACATATGGCAATATGGGGGCTGCTGACTTTGATGATGACTCCAACCATAGGGAACTTTTGGACTTAGAAACCGCATCAAAAAACAAACAATTTGTAAATATGATGAATGATAATTATTTTGGAGACAACATTTATGCAGATTATTTTACACCTGACCGTGTGGAGAGTTTTGATGTAGATAAAGAGTCCAATTTGAGCAAGGGTAGGGAGGAGATGTATCATGTTTGGGGTGAACCATCTCAAAAGGAAAATGAATTTGTCCTACCAAATTTTATTCACGAGAGTTATAAAATCGCCGAGAGCAATATGGATTACGACGTAGGTGAGAGTGAGCATATAGATACTGTAAATAGGGTTGAGCGAGATAGTAAAGTTGATTTGTTGACTGAAAGCCGTAGTGAAGAGGAGCCACCTTTGAACATCTGTACTGACGAGCGAATGCCACCTAGAGGCGAGCTGAGTGGTCAAGAGAGCAATGGCGATATGGAATCTCCTTGGAGTGGGATGTATCCAGAGGTGACACCAGCCGAACCCTACGATCTAATAGCACGCGAGAGTTGGGTGTCAGATGGCTCCGACATTGACACCACAGAGAAAAGGGACAATTTGGAAGAAGACGCGTTATTCACCAAGACACGGTTGCACACGTGCACTCAGTGTGGCCTTAAGTTCCCGACGCTCAAAGAGCTGCGTTCACACTGCAATGCCTCGTACTCGCACGGTCGGGTTGTCACTTCTAGAGCGATTAAGAAGGAGGAGAAGCCAGATGAAGGTGTACTGGAAGGAAATCTCCTATACGACTCAAAAGAATCGGTCGCCACTACGATGCTACAAGCGTACGACACACTTACAGAATCGAAGCCGGAACTCCGAGGGCTCATAAAACGGGAGAAGAAGAAGAAAAGGAACTTTGTGTGTCCCACGTGTAAAGTCGACCAAGGGAACGATGTAGACTTCAACAACCATCTCAAGATACATCCGCTCGAGTGTCAGACGTGTGGAAAATGCTTCTACAGACGGGCCAACCTGGCGCTGCACATCAAGACACATCTCGGGATAAAGAATTATAAGTGCGAGATATGCCAGAAGCGTTTCATCACACGGCAGAAGCTGAACGAGCACCGCAACGTGCACACGGGACACGCGCCCGTCAAGTGCACCGTGTGCGATGACACCTTCCGGAGATACTCGAATATGGTGCAGCATAGGGACCGGCACCACCTGAACAAGAAGGCGAAGGTGCGCGACTACATCTGCCAGTGCGGGGCCGTGTTCCACTCGCGCGCCAAGCTGCACTGGCACCGCGAGACGCACGACGGCCGGCCCAAGGCCTGCGCCTACTGCAGCGACAAGTTCGTGCACGCGGCCTCGCTCACGCGCCACGTGCGCCGCACGCACAACGAGTACTACCTGTCCCCCCGGCTGCGGGGCAAGGTGGACAACGTCACGTGCCCCGTGTGCAAGCAGGTGCGTGCCCCCCGCCCCCCGCCCCCTGCCCCCCCCTGCCCCCCCTGCAGCGACAAGTTCGTGCACGCGGCCTCGCTCACGCGCCACGTGCGCCGCACGCACAACGAGTACTACCTGTCCCCCCGGCTGCGGGGCAAGGTGGACAACGTCACGTGCCCCGTGTGCAAGCAGGTGCGTGCCCCCCGCCCCCTGCCCCCCCTGCAGCGACAAGTTCGTGCACGCGGCCTCGCTCACGCGCCACGTGCGCCGCACGCACAACGAGTACTACCTGTCCCCCCGGCTGCGGGGCAAGGTGGACAACGTCACGTGCCCCGTGTGCAAGCAGGTGCGTGCCCCCCGCCCCCCGCCCCCTGCCCCCCCTGCCCCCCCTGCAGCGACAAGTTCGTGCACGCGGCCTCGCTCACGCGCCACGTGCGCCGCACGCACAACGAGTACTACCTGTCCCCCCGGCTGCGGGGCAAGGTGGACAACGTCACGTGCCCCGTGTGCAAGCAGGTGTACCTGCGCACGAACCTGCGCGCGCACCTGCTGACGCACAGCGGCAAGCGGCCGTACCCCTGCATCATCTGCAACAAGGCGTTCACCACCAAGTGGAACCTGAAGCTGCACCGCTGGACGCACACGAGCCGCTCGGCGAAGCCCTACAAGTGCGCGCTGTGCAAGGGCGCGTTCGTGCGGCACGCGGAGTACGTGGCGCACATGAACGCGCACAAGTCCGTGCGCCCGTACACCTGCAACTACTGCGGCTGCCAGTTCATCCGCAAGTACAACTGCCAGCGGCACGTGCGCGAACACGAGACGGCCAAGAAGTACGTGTGCAAGGTGCCCGAGTGCGGCAAGTCGTTCCACCGCAGCTACTACCTGTCGGAGCACATGAAGGTGCACAGCGGCGTGCGACCGTTCGCCTGCAACATCTGCGGCAAGACCTCCAGCAACAAGTCGAACCACAACAAGCACGTGAAGATACACCACGCGCGCGAGCCCGTCGCCACCGAGGCGTAG
Protein Sequence: MDQRVQCPVCTLFLHSGMSLESHLDTHPKDQVIKALCSLSAKNVGSRTPTPSTSERSFRSRTPATDDSVRWSSSRRSAESGYWRRTPSRNKSSSSSNISRNVTPDIRIGGINFENNAVNSCGEFSECAVKSTKSAPVYTTNVEPPQADFNTQFPFYPDSQDDPEIKYSRSTDYSVVDNSNPLFPYNLPVIGPTMKMPPTMLTPHNKRANNIVKLVPKQNNMLMKNIGGLRYITPNVKPYPVMMSAAPSFMQKNVQTNMMMAGNMPVPDMLEPKAGGPMPAQFNQMSADSLSSGTTVVTQNSQIIYREMVHNMDGKPYISNMPHMLSTQENMAQSSSMYQNVMVVDQFGNASCMYNTPPPLIPKPCNPPMFGSNLAHLPNTMDKSIPNIVNDANKTLIIEVSPMLSTNEVDIPKTSADTLSSQSESNSQKAIDTDTSETKISTAGSCKGLKILSNIKVEVPVQHHKNMINTVMDLTGPGDSGYIQRPSSPEKILPDLDEKPSNISDDCTQASNSSGDNGAPHSFSVIKNVGNPQTCKEFTVKQTTVKLDIEFSDSCPVPDLICNEKPSISPCSELLDHGENSMDRCSPITKSEPSPKPENCSKNEAENDYVVPAKRKASVNIESLSPKSGSTSKQELAAKNGTPSPKPQPSPVLRTESSENNDSSTNSENKKATKTKNFPLRLNNIFVKKHKKVLKIKNLKPLQSETDPQPSSSSKAENFFGDKPQNFQNVKDIVDIPLTVGKTEINDNKKEFDADTEEQSMDIEPIAPSTISHSNNYTTTIDLVHIKEEANSSNEFTNEMDRSNRDLTPLESLRPINVITYGNMGAADFDDDSNHRELLDLETASKNKQFVNMMNDNYFGDNIYADYFTPDRVESFDVDKESNLSKGREEMYHVWGEPSQKENEFVLPNFIHESYKIAESNMDYDVGESEHIDTVNRVERDSKVDLLTESRSEEEPPLNICTDERMPPRGELSGQESNGDMESPWSGMYPEVTPAEPYDLIARESWVSDGSDIDTTEKRDNLEEDALFTKTRLHTCTQCGLKFPTLKELRSHCNASYSHGRVVTSRAIKKEEKPDEGVLEGNLLYDSKESVATTMLQAYDTLTESKPELRGLIKREKKKKRNFVCPTCKVDQGNDVDFNNHLKIHPLECQTCGKCFYRRANLALHIKTHLGIKNYKCEICQKRFITRQKLNEHRNVHTGHAPVKCTVCDDTFRRYSNMVQHRDRHHLNKKAKVRDYICQCGAVFHSRAKLHWHRETHDGRPKACAYCSDKFVHAASLTRHVRRTHNEYYLSPRLRGKVDNVTCPVCKQVRAPRPPPPAPPCPPCSDKFVHAASLTRHVRRTHNEYYLSPRLRGKVDNVTCPVCKQVRAPRPLPPLQRQVRARGLAHAPRAPHAQRVLPVPPAAGQGGQRHVPRVQAGACPPPPAPCPPCPPCSDKFVHAASLTRHVRRTHNEYYLSPRLRGKVDNVTCPVCKQVYLRTNLRAHLLTHSGKRPYPCIICNKAFTTKWNLKLHRWTHTSRSAKPYKCALCKGAFVRHAEYVAHMNAHKSVRPYTCNYCGCQFIRKYNCQRHVREHETAKKYVCKVPECGKSFHRSYYLSEHMKVHSGVRPFACNICGKTSSNKSNHNKHVKIHHAREPVATEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00357939;
90% Identity: -
80% Identity: -