Basic Information

Insect: Colias croceus
Gene Symbol: -
Assembly: GCA_905220415.1
Location: HG991987.1:1272088-1283383[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0023 0.18 12.7 1.0 1 23 401 423 401 423 0.97

2 9 1.5e-05 0.0012 19.5 2.8 1 23 469 492 469 492 0.97

3 9 0.21 17 6.5 0.0 3 23 499 519 498 519 0.92

4 9 2.9e-05 0.0023 18.7 5.8 1 23 526 548 526 548 0.97

5 9 7.2e-05 0.0057 17.5 0.7 3 23 555 575 554 575 0.98

6 9 5.1e-05 0.0041 17.9 0.8 1 23 584 606 584 606 0.99

7 9 2.2e-06 0.00018 22.2 1.2 1 23 612 635 612 635 0.97

8 9 0.34 27 5.9 0.3 1 12 641 652 641 664 0.86

9 9 0.027 2.1 9.4 0.9 1 23 672 695 672 695 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0023	0.18	12.7	1.0	1	23	401	423	401	423	0.97
2	9	1.5e-05	0.0012	19.5	2.8	1	23	469	492	469	492	0.97
3	9	0.21	17	6.5	0.0	3	23	499	519	498	519	0.92
4	9	2.9e-05	0.0023	18.7	5.8	1	23	526	548	526	548	0.97
5	9	7.2e-05	0.0057	17.5	0.7	3	23	555	575	554	575	0.98
6	9	5.1e-05	0.0041	17.9	0.8	1	23	584	606	584	606	0.99
7	9	2.2e-06	0.00018	22.2	1.2	1	23	612	635	612	635	0.97
8	9	0.34	27	5.9	0.3	1	12	641	652	641	664	0.86
9	9	0.027	2.1	9.4	0.9	1	23	672	695	672	695	0.95

Sequence Information

Coding Sequence: ATGTTGCATAATAATCAATTCGGACCGAACGATGTTAGTGGTCAAACAAATTTGACATCCGAACAGAACTTACAAAATAATGTAAATAATCAAAACAAAGCAACACAACAACTAACGCAATCAATAAACCCAGGTTTTAACATACCAGACTATTCGTACGGATTAAATATGAACGCGGGAATAAGTCACTATCCAAATTTCCAGACGATCGGTCTACCCCAAAACTTTTTGCCACAAAATCCGATGCATTGGCAGAACAACGTGATGCCGATGAATTTGAACATACAGAACGGGCCCTATGGGATTCCATTTGAGAGAAAGTTTCATAAAGAAACAACATTTCTTAACGTGCCGCAAGTGACACCAAAATATAAACATGCAGATACAAGCCATATCAACAACTATCAACAGTTTAATCATAATTTCGTGTTTAACAATCAAGACACACACACATTGGGAAGTTATAATGAAAATAGTGCAAGAAACATGAAAAATATAGACAATTTTAAACACTATATGGATAATAATTTAGATCTGACAGTAAAATTAAGTCAAAAACGTGATATTGATAAAAGTAAACATGTAAACGAAACATCTAATTCAGACAATGTTATTCTTAAGGACTGTTTGCAGAGAAACAAAGACGTAGCTTTAAATCCAAGTAAAGACGCAGTGTGTATGAAAACCAACAATATTCTTAACACAAATAAAGAGAGTGACAAAATAGAATACAGCGATTTCAGCGATAGTTTCAGTATGAAATCCTACAAGGACTCGGATTCTCGAAAACGTAGTTTGGAAAAGACGTTACGCATGCTAGAAATAAGTATTATAAACAGCACTAACTCTCGGCAGAACAGGCAAGAGGAATCAAGTTTGTCCAACCCTACAAATTTTTTAAATACAGATAATAGATTTACAGATAATACAATAATTGAAAAGACAAATGAAACGGAACAGAGTGAAAACGGAAAAGTATTAGATACAAAAAAATGTGTAAAAAATGAACTGAAGCCTGAAACTCTTGATGTTAAAAAAGAAACAATGCCAAATGTAGAAACGGACACAAATAATCCTTTTCAGAGGGACTGTTTTGGTGTGAGAAGTGAAGCGGTGTTTAATTGTAATATATTTGACTCGGAAATTGGGCAGACTCTCGCTAGAGAGTTGATTAATAATGGAACAACAACAGACTCCTATTTCGAATGTCCCTACTGCAGTCTGTTCTTTAATAATCCAAAACGATTCTTGATACACACAAAATGGCATTCTTTTGGTTTAACAAATGAGAAACGATTTGAATTGCAACGGGAGAAGGAGGTGAAACGACAGATGAAGAAGGAAGCCAGAATATTAGAGAAAAAACAACAGACTGAGGTAAAAAAAGTGGAAGAACCAGAGGATTATAGCTGTAAGCTATGTCAGAAAACATTCAATACTTACGGTAGTTTGAAGAATCATAGACAGAAAGTACACCCTACACGGTCGCGTAATTGTAAAATTTGTGGCAAGAGCATACTAGGGTGGGTGGCGATGAAGGCACATTTAGCTACACACGACGGGGCAGATAGTGGGTTCCATTGCCCCGAGTGCCCCAAGAGGTTTAAACACGCGCATTCGCTTGCAAAACACCGGGATACGCATAAGGAAAAAACGCAAGCCTGTTCACAATGCCCAAAGAAGTTCGGCTCCACAACACTACTAAACATACACATGAAGACGCACGAGCGCATGCAGCGAGGCGCCACGTTCCGTTGCACGTACTGTGGGAAGGGGTACTTCGAGTCGTTCAGTTTGGCGGCGCACGAGCGAACGCACAGAAACGAAAAGCCATTCCAATGTGATATATGCAGTACGAGATTTGGGACCAACTCAAGTTTGAAGAGGCATTTGAAAGTGTCACACAGCACAAACAAGCCGTTCGTCTGTTCGACATGTCACAGATCGTTCATGTCTGAAGCTATTAGAGACAGACACGAACTCCGTTACCATGGCAACCCGGAGGATTTCAAATATCCCTGCAATATGTGTCCGTCAAAATATTTCGAGTTGAAAGATTTGAAGAAACATTTGTACAAAGTTCACCCGAAAGTTAAGAGAAAGAAGCATTCGGATAGTGATTGTTCTGATGAATAA
Protein Sequence: MLHNNQFGPNDVSGQTNLTSEQNLQNNVNNQNKATQQLTQSINPGFNIPDYSYGLNMNAGISHYPNFQTIGLPQNFLPQNPMHWQNNVMPMNLNIQNGPYGIPFERKFHKETTFLNVPQVTPKYKHADTSHINNYQQFNHNFVFNNQDTHTLGSYNENSARNMKNIDNFKHYMDNNLDLTVKLSQKRDIDKSKHVNETSNSDNVILKDCLQRNKDVALNPSKDAVCMKTNNILNTNKESDKIEYSDFSDSFSMKSYKDSDSRKRSLEKTLRMLEISIINSTNSRQNRQEESSLSNPTNFLNTDNRFTDNTIIEKTNETEQSENGKVLDTKKCVKNELKPETLDVKKETMPNVETDTNNPFQRDCFGVRSEAVFNCNIFDSEIGQTLARELINNGTTTDSYFECPYCSLFFNNPKRFLIHTKWHSFGLTNEKRFELQREKEVKRQMKKEARILEKKQQTEVKKVEEPEDYSCKLCQKTFNTYGSLKNHRQKVHPTRSRNCKICGKSILGWVAMKAHLATHDGADSGFHCPECPKRFKHAHSLAKHRDTHKEKTQACSQCPKKFGSTTLLNIHMKTHERMQRGATFRCTYCGKGYFESFSLAAHERTHRNEKPFQCDICSTRFGTNSSLKRHLKVSHSTNKPFVCSTCHRSFMSEAIRDRHELRYHGNPEDFKYPCNMCPSKYFELKDLKKHLYKVHPKVKRKKHSDSDCSDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00357955; iTF_01562249;
90% Identity: iTF_00357955;
80% Identity: -