Ccro022256.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- -
- Assembly
- GCA_905220415.1
- Location
- HG991981.1:6740141-6753254[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5.9e-05 0.0047 17.7 1.2 1 23 210 232 210 232 0.97 2 10 3.5 2.8e+02 2.7 0.5 2 21 260 279 259 280 0.91 3 10 0.00058 0.046 14.6 0.5 3 23 301 321 299 321 0.96 4 10 1.8e-06 0.00014 22.5 0.6 1 23 325 347 325 347 0.99 5 10 0.45 36 5.5 0.5 1 23 352 375 352 375 0.91 6 10 0.018 1.4 9.9 0.5 1 23 381 404 381 404 0.93 7 10 0.00017 0.014 16.2 1.3 1 23 411 434 411 434 0.98 8 10 4.7e-05 0.0037 18.0 3.7 1 23 440 462 440 462 0.98 9 10 9.2e-06 0.00073 20.3 2.6 1 23 468 490 468 490 0.98 10 10 1.6e-06 0.00013 22.6 0.9 1 23 496 518 496 518 0.98
Sequence Information
- Coding Sequence
- ATGGAAAGCAGTATAATGGTAGAAACGTTACCATTACTGGGCAATTGTTGTTTATGCACTAAATTGGATGTTGTTAAAAGTATGATAGGTACGGAGATTGGTTGTAAACAGTCAGAAACGTACTCAGATATATTGATGAAGTGTTTTTCTATAAATGTTGCAAGCCTAGATGTGGAAGATACTAAATGCCTTATTTGTGAAAGTTGTATCGACCAACTAATGTTATGTTTTAAGTTTAAAAAACAAGTTGAAGAGTCTTTAAAATCTTTAGAAGCAGCTGCGAGATTAAAGAACGCGGACGAAAATGCGATGGCAGTTAAAGAGGAGATATCTAAAGACATGGGCAATGATAGTGCGAGTGATGATGAAATCCTCCTCAGCCATTTCAAGCAAGAATCAAACAGTGATTATATTGATGATGAAATGAACGAAGACATATTAAGCGGTATGGCACTTAAGAACGAACCGGACGAGTACAGACCTCCAAGAAAAACGCGGAAAAAGCTTCCCACTAGCAAGAAGAAAATGACCTATTCGAGCGTGTGTAAAAAAGTAGCAGACTTGGAAGATACAGAGGCTCTAATAACTGCCGGGCTTTTCCCCTTCAAAATGAACAGAGACAACACGTTTTCATGCACAATATGTCCCGAAAAGTGTACCAACCTGGATGACTTGAAGACCCACATTAGCTTACACAGTACGTCAAACATGGCGACAGCTATCAAGAAAATGGAGCATTCCAACTCGCAGAAGTTCCAAAAGAATGGCAAAGTACTCCGATGCAAGAATTGCGCAACAGACGTGCATAACTATGACGAAATGAAACATCATATAGAAGTCTGTAGGAATGGGTGTCGAGTCAACAAACTTCCCTTTAAACTAGAAAAAGATCAACTCGATTGTCCCATTTGCAAGAAGACGTTCCTAAACTTTGTCACCCTAAACACTCATATGAACGAACATTACCCAAACTACACTTGTGATAGTTGTGGAAAGGCTTTCGCTTCTCGATCCCGTCTCAGAGGCCACTTGAGAACGCACGAGATCGGATCGTTCCCGTGTCGTTTCTGCGATATCGTATTCGATAAAGTGACTAAACGGGAGAACCACGTGTCGAAAGAACACAAATCTGGCATCAGATATGTTTGCAAAAAGTGTAATATATCCTTATCGTCTTTTTACGCAAGGCAAAAACATTTAGCGGAAGTTCATAATGAGGAACTGAAGAAATATAAGTGCAAAGCCTGTACACAGAGCTATATAACGCCAGGGCATTTGTCCAGTCATGTCAGACGCGATCATTTAAACGAAAGGAACCATAAATGTACCAAATGTGACTTGGCGTTTTATACGAGAAATTCGCTAAAAATGCACATGATAAAACACGATGGGGAAAGAATTCATGTTTGCAATGTTTGCAATAAATCGTATCAGAGATTGAAAACTTTAAGGGAGCACATGCGTATACATAATAATGACAAGCGGTTCACATGCCCCGTGTGTGGATGGGCCTTTACGCAAAAGTGCACTTTGAAAGGACACTTAAAAGTGCACGAGCGGAATTTGAATTAG
- Protein Sequence
- MESSIMVETLPLLGNCCLCTKLDVVKSMIGTEIGCKQSETYSDILMKCFSINVASLDVEDTKCLICESCIDQLMLCFKFKKQVEESLKSLEAAARLKNADENAMAVKEEISKDMGNDSASDDEILLSHFKQESNSDYIDDEMNEDILSGMALKNEPDEYRPPRKTRKKLPTSKKKMTYSSVCKKVADLEDTEALITAGLFPFKMNRDNTFSCTICPEKCTNLDDLKTHISLHSTSNMATAIKKMEHSNSQKFQKNGKVLRCKNCATDVHNYDEMKHHIEVCRNGCRVNKLPFKLEKDQLDCPICKKTFLNFVTLNTHMNEHYPNYTCDSCGKAFASRSRLRGHLRTHEIGSFPCRFCDIVFDKVTKRENHVSKEHKSGIRYVCKKCNISLSSFYARQKHLAEVHNEELKKYKCKACTQSYITPGHLSSHVRRDHLNERNHKCTKCDLAFYTRNSLKMHMIKHDGERIHVCNVCNKSYQRLKTLREHMRIHNNDKRFTCPVCGWAFTQKCTLKGHLKVHERNLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01562278; iTF_00357918;
- 90% Identity
- iTF_00357918;
- 80% Identity
- -