Ccro014354.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Colias croceus
Gene Symbol
-
Assembly
GCA_905220415.1
Location
HG991972.1:8375930-8390712[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00035 0.028 15.3 3.4 2 23 276 297 276 297 0.96
2 10 0.00069 0.055 14.3 1.2 1 23 328 350 328 350 0.98
3 10 0.00054 0.043 14.7 0.6 2 23 358 379 357 379 0.95
4 10 0.0059 0.47 11.4 2.7 1 23 385 407 385 407 0.98
5 10 0.00021 0.016 16.0 0.7 1 23 413 435 413 435 0.96
6 10 4.9e-06 0.00039 21.1 2.7 1 23 440 462 440 462 0.96
7 10 0.25 20 6.3 0.1 1 13 468 480 468 482 0.90
8 10 0.0004 0.032 15.1 0.9 6 23 832 849 830 849 0.96
9 10 6.2e-07 4.9e-05 23.9 1.4 1 23 855 877 855 877 0.99
10 10 0.00098 0.077 13.9 2.2 1 20 883 902 883 905 0.95

Sequence Information

Coding Sequence
ATGAAGGCTCAACTACCCCGGACTGCAGCCCAGATAGCACACACAAATCCTGCAATAAACTACATTACCGTTACAATAATCCACGTTACAAACTTTTACTTTACACAAGTTATCTCCGATACAGTCATTCAAGGCTGGCGTCCACTAGGCGAATCGGGCCGGGCCGCATCGCAACGCAAAAATACGCCAGCCTATGTTTTGTATGAAACATCGTCCATTAGCGACGGATCGGGTCGGGGCGGGCCGCAACGCATTGGCGGATATCGCTTCGCAGACGGATTTCTGCCGGCGCGCGGTGCGCTGCGGCCCGCCCCGACCCGTCTAGTGGACGCAGGCAGGCGGATTGGCGATACCAAGTTAGGGCGTATTCAGAAAGAAAGCTTGAAACTTATAAGCGCTTATAAGCGCTTATCGGCGCTTGTCAGCGCTGGTAACCTGCGCAGGAAAATATATGAACATGCGCCTATAAGCGCTGTTCGGCGCCGACAAGTTCCGACAAGCTTCAACAATGCTGGTGGCTGCCATATAAAATTTGTTTTGATCAAAGAAGACGATGCCTTACCAAAAAATATATGTGAACAATGTTACAATTGCCTTATCTCATTTAACGAGTTCAGAAAGTTAGCAGTAAATGTTGACATACAGCTAAAAGACATTTACAAAAATGAAATAACAACCAACCATGAAGAGTGTATACAAAATGATATTGAAATTAAAATTGAAGAAGAATTTGTGGACACTAAGTTGAACATAAAATTTAAAACAGAACCAAAACAAGAAGACGATGATAGATTTAGTGACACTTTAAGCAAAACAGATGTTAATGAATGTGAGTTCTGTAAGAAGAAGTTCAAAAATGAATCGAAATTAAAACAGCACAGATTGTATCATTATAAAAAACTTAACAAGCTAGATAAAACAAAAGCTAACAATGAAAACCTGAATGACTTGCTTGCCAATAAATCTAAAGAAGATGAAAAATTTACTTGCGAATTATGTTCCGTAACATTCAAGTCCATAAATTCTCTATCTGCCCACAAAAGAAAACACATACAAAAGGATAGAGTACTATCTTGTTCGGTTTGTAGCAAAGTGTTCAAGAAACTCAGTCCTTTGAAACAACACGAACTTTCGCATGTTTCAAAGCATCCTTACAAATGTTCTATATGTTCTAAGACATTTGCTTTAGAGAATAGGTTCTTGGAACATATGAATCACCATAAAGGGATAAAGGCACATGTATGTTTGTTATGTCAGAAGGCCTTTGCCCATTTGGCAACGCTTAAGGCTCATATGGGTATACATACAAATAAGTCATATCTTTGCCCCACTTGTGGGAAAAGCTTTCATTCGAGTACGAATTTAAATCAGCATGTAAAGAGGCACGCTGGGTTGAAGTCATTTCCTTGTACTATGTGTCCTAAACAGTTTGCTAGTAAAGTGTTGAGTGCATTGAGTGAAGGAAGTTTGGTTAGTGTATGTGAAGCGTCCGAGCCGCTGGTGACGGTGGACGCGTACCACCCGCCGCTGCTGGTCTCGGCGTGGCCGCGCAGCCCGCCCGCTGCCGCTCCTTACTCAGACACAGATGCTAGTAAATCGCAAAAAGATTACGAAATATTCAGTAGGTATAGATCTAAGGTAAAATGTGCGATTGAAATGGCGTTAAACAGTTATCGTCGGCGAGTTGAAGCGAATTTAATAGAAGACCCCAAATCTTTTTGGAAGTTTATTAACAATAGTCGGGTAATTAAAAAATCTAAACCTCTGGTTAGCGACAATGGCGAGGTGATGACTGCACAGCAAAGCGTGGATGCATTTTCTGAATATTTTAGGTCGGTTTATATTCAGCAAAAACCAAAGTTAGATGTAAACTTAGCGATAACACAAGCAAATTGTTTAAACGGAGCAGTAAGAGTGCACATCGGAGAATTACAGCTTTGTGAAGTACTGAAGGCGCTTAGTCAACTTAAGCCAAAGACATCTTCAGGTCCAGACCAGATACCGCCATATATATTGAAGGATTGCCGCCTGGTGTTGGCAAAGCCCCTTCTCCATATATACAACTTATGCCTTAAAACAGCTGTTTTCCCAAACTGTTGGAAGATAAGTCGCGTCGTTCCAGTGCCCAAAGGGGGACGTGGTAACAGAGTGGATGAGTATAGGCCTGTTGCAATATTGCCCTCACCAGCGAAGGTTTTTGAATCTGCGGTGCAAAAAAGCATATTGACACAGATGTCGAGGGTAACTGAAGTTAAAGATCTTGGTGTTAATCTCAGTGCTGACTTAAGTTATAGTAAGCACATAACAAATATTTATGGATACGCGGAGCGCCGGCGCCGGCCTCCGCTGCTGCTGGTGCCGTCCGCTCGCACCAACTTGCTAGGTCAGGCACCTATGACGCGTGCACTTCGTTCACTCAATGAAATAGCAATCAAAACGGATATATTTTGTTGCACTTGGGATGAATTCACGCGAGTAGCTTTATTTGTACTATGCTATAAAAAGTTCACAAGCAAACAACAGCTCACGCGCCATTACCGTATACACACGGGCGAGAAACCGTACCAATGTGATATTTGTAATAAGGCATACTCACAGAGCAACGATCTTGAGAAACATAAACGAAAGCACCTTGGAGAGAAGTTGTATAAGTGCTCACAATGTTCAGAGAGTTTTCGACTGAAGACGGAACTACGGCATCATATACCCCAACATTATATTTCACCACAGTTTAAAATAATCGAAACTGTACCTAAAGATATCAATTCTGATGCACAAAATGATAGTACTAAAAAGGATTTGGAAACTTAA
Protein Sequence
MKAQLPRTAAQIAHTNPAINYITVTIIHVTNFYFTQVISDTVIQGWRPLGESGRAASQRKNTPAYVLYETSSISDGSGRGGPQRIGGYRFADGFLPARGALRPAPTRLVDAGRRIGDTKLGRIQKESLKLISAYKRLSALVSAGNLRRKIYEHAPISAVRRRQVPTSFNNAGGCHIKFVLIKEDDALPKNICEQCYNCLISFNEFRKLAVNVDIQLKDIYKNEITTNHEECIQNDIEIKIEEEFVDTKLNIKFKTEPKQEDDDRFSDTLSKTDVNECEFCKKKFKNESKLKQHRLYHYKKLNKLDKTKANNENLNDLLANKSKEDEKFTCELCSVTFKSINSLSAHKRKHIQKDRVLSCSVCSKVFKKLSPLKQHELSHVSKHPYKCSICSKTFALENRFLEHMNHHKGIKAHVCLLCQKAFAHLATLKAHMGIHTNKSYLCPTCGKSFHSSTNLNQHVKRHAGLKSFPCTMCPKQFASKVLSALSEGSLVSVCEASEPLVTVDAYHPPLLVSAWPRSPPAAAPYSDTDASKSQKDYEIFSRYRSKVKCAIEMALNSYRRRVEANLIEDPKSFWKFINNSRVIKKSKPLVSDNGEVMTAQQSVDAFSEYFRSVYIQQKPKLDVNLAITQANCLNGAVRVHIGELQLCEVLKALSQLKPKTSSGPDQIPPYILKDCRLVLAKPLLHIYNLCLKTAVFPNCWKISRVVPVPKGGRGNRVDEYRPVAILPSPAKVFESAVQKSILTQMSRVTEVKDLGVNLSADLSYSKHITNIYGYAERRRRPPLLLVPSARTNLLGQAPMTRALRSLNEIAIKTDIFCCTWDEFTRVALFVLCYKKFTSKQQLTRHYRIHTGEKPYQCDICNKAYSQSNDLEKHKRKHLGEKLYKCSQCSESFRLKTELRHHIPQHYISPQFKIIETVPKDINSDAQNDSTKKDLET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-