Ccro021804.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- -
- Assembly
- GCA_905220415.1
- Location
- HG991981.1:4083772-4098873[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.13 10 7.2 0.6 2 21 207 226 206 229 0.88 2 10 0.0061 0.48 11.4 0.7 2 23 260 282 259 282 0.95 3 10 0.024 1.9 9.5 1.6 2 23 306 327 305 327 0.95 4 10 5.1e-05 0.004 17.9 1.7 1 23 331 353 331 353 0.98 5 10 0.42 33 5.6 4.4 1 13 358 370 358 381 0.89 6 10 9.5e-05 0.0075 17.1 2.3 3 23 391 412 389 412 0.91 7 10 6e-07 4.7e-05 24.0 1.4 1 23 419 442 419 442 0.98 8 10 0.0019 0.15 13.0 0.3 1 23 448 470 448 470 0.96 9 10 1.2e-06 9.7e-05 23.0 3.7 1 23 476 498 476 498 0.98 10 10 3.5e-05 0.0027 18.4 1.9 1 23 504 527 504 527 0.97
Sequence Information
- Coding Sequence
- ATGGACACAAATTCATTATGTCGATGTTGCCTTGCTCGTCCACCGGACAAAGATATAAAAACTACGTATACATGTTTGGGAAAAGATGAAATTTACGCCGATATGCTAAAGGAGTGCTTCGAAATTCATATAACAGTGGAACAAATGGAGGTTGACAACGGTATATGCGAGGTTTGCATCGCGCGTCTCCGGGACGCATTCGACTTCAAGCACCAAGTGTTGAGGTGTCAGAAGGACTTGATGAATATGGGTGATAGTTTTAAAACCGAAAAAATATCAGTTATCAAAGAAGAAGTTATGGACGATGATGACTATCTTTTTGATTTAAACAATGACGATATAACGGCAATAGATTCGTCTGCAAGCGGCAAATTAGCTGAGATGCTCGGCCTCGGCGACATCAGTATAAAGCGTAAAAAGAAACGGAAAAAATCGGAACAATACGATGATTGTGACGATTTACCTCTAAAATTACCTTCCGACTTTCGTATCAAGAGAGTTAAAGAAGAAAACGGGGCCATAAGCGTCAGCGACAACTCGAAACACATTTACAACGTGAAAAAGATATTAAAATACTCAAATTGTACACCATTCTTCAATAAAACTTTAAGCGGAATAGTTTGTGCATACTGCAAGATAACATGCGCAAATATAAAAGAATTAAAAACCCACAACGAGGAAAACCACAAACAAACATCAAGTATATACCACCAGACCACAGACCACAAAAGACTGGACAAAAGTAACCTAGCCGTCAAGATGGATATCACAGATCTGCAATGTACACTTTGCCAAAAGAATATAGAAAATATATCGAAACTAAAGAAACATCTAATGAACGAACACAGCCAGAAATTCTATCCAGATCTCTACGACTATATTTTTGAATTCAAAATAACGGACGATGAAATACTAAACTGCGCCCTGTGTCATTCAACGTTTGAAACGTTCAAAATGCTGTTACAACACATGAATGGGCATTACCGAAATTATATATGCGAAGTTTGCGATTTGGGCTTCATAAATCAGCACAGATTGAAAAATCACAAGCGAACACACGAAATTGGCACGTTCAAGTGTTCGTTTTGTGAGAAAGTGTTCAGTACGAGGGTGCGGAAACAGTGTCACGAGAAATACACGCATAATACAAGCGCTAGATATACAACGATATGTCCACACTGTGACAAAACCTTCAATAGTTACTACCAAAGAAATAGGCATATGTTCGACGAGCACAACATAGCAGCGGCTACATACAAATGCAATGTGTGTGATAAATCGTTTATTCTAAAGTCCAAATTGACGTCTCATATCAAAAAAGTGCATTTGATGGAGAGGAATCATATATGTCCGGACTGCGGACAAGGGTTCTTCATAAAGCAGTCGTTAGACGAACATATGGTCAAGCATAACGGTGAAAGGTTGTTCAGTTGTACCGTGTGTCATAAGTCGTACGCAAGGAAGAAAACGTTAAGGGAACATATGAGGATACATAATAATGATAGGCGGTTCAAGTGTGGGGTCTGCGGTTATGCGTTCGTGCAAAAGTGTAGTATGAAAAGTCATATGCTATCGAACCACGGTATGTCGCTGACGGAGTTCGAAAATGTGGCCAAAGACATGATTAGTGCGGGTGTGCAGTGA
- Protein Sequence
- MDTNSLCRCCLARPPDKDIKTTYTCLGKDEIYADMLKECFEIHITVEQMEVDNGICEVCIARLRDAFDFKHQVLRCQKDLMNMGDSFKTEKISVIKEEVMDDDDYLFDLNNDDITAIDSSASGKLAEMLGLGDISIKRKKKRKKSEQYDDCDDLPLKLPSDFRIKRVKEENGAISVSDNSKHIYNVKKILKYSNCTPFFNKTLSGIVCAYCKITCANIKELKTHNEENHKQTSSIYHQTTDHKRLDKSNLAVKMDITDLQCTLCQKNIENISKLKKHLMNEHSQKFYPDLYDYIFEFKITDDEILNCALCHSTFETFKMLLQHMNGHYRNYICEVCDLGFINQHRLKNHKRTHEIGTFKCSFCEKVFSTRVRKQCHEKYTHNTSARYTTICPHCDKTFNSYYQRNRHMFDEHNIAAATYKCNVCDKSFILKSKLTSHIKKVHLMERNHICPDCGQGFFIKQSLDEHMVKHNGERLFSCTVCHKSYARKKTLREHMRIHNNDRRFKCGVCGYAFVQKCSMKSHMLSNHGMSLTEFENVAKDMISAGVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01193810;
- 90% Identity
- iTF_00357915;
- 80% Identity
- -