Ccro022800.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- -
- Assembly
- GCA_905220415.1
- Location
- HG991988.1:923688-938513[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.039 3.1 8.8 3.5 1 23 236 259 236 259 0.93 2 12 0.00059 0.046 14.6 3.3 1 23 267 289 267 289 0.98 3 12 0.94 74 4.5 0.5 1 11 293 303 293 313 0.81 4 12 0.00014 0.011 16.6 6.6 1 23 320 343 320 343 0.97 5 12 0.0039 0.31 12.0 1.0 2 21 348 367 348 368 0.92 6 12 0.00013 0.01 16.6 0.5 2 23 384 405 383 405 0.94 7 12 0.00022 0.017 15.9 0.1 1 23 410 432 410 432 0.98 8 12 0.00011 0.0087 16.9 5.6 1 21 441 461 441 466 0.94 9 12 0.0022 0.17 12.8 3.3 1 23 474 497 474 497 0.91 10 12 0.0021 0.16 12.8 0.4 1 23 503 526 503 526 0.95 11 12 0.0056 0.45 11.5 0.5 3 19 540 556 538 557 0.91 12 12 0.0027 0.22 12.5 0.8 1 23 570 593 570 593 0.98
Sequence Information
- Coding Sequence
- ATGAAGGAAATAGACATAAATATAGAGGGATATAATGTGAACGGCATATGTGTTGGTTGTTTGAACCACAATCGGAATATGTTTTACAGAAACGAAGTTAAAGAATGTTTTAAAACATTAGCTGATATTGATGTGCCAGACGGCCTATCAATACAAGTATGTTGGGAGTGTTTAGCTCGCATAAAAAACATCATGCAGTTTAAGAAACAAATAGTAAAGTCATATGATATACTTATTAACTACTCAAGAAAACATACCTTCCTGAACTCTCCCTACGATCTTTCACAACACGCTACCACAAATCTAATCACCACTAAACTAGTCGGCTATACAAGTAGAGACGGTGATTTGGAAGAAATTAAACAAGAGAAATTTGAGTCGGTAGCAGACGTGAAGGAGGAATTTGATGTTGATGTTTTTGGTGAAACATTCATAAAAGACGAAGATACATTTGATTTAGGGGCAATAGACACGCATTCTTCTGACGACAATACTCTCTTATCGGATTTAGTAAGAGATGATGGAGATAATAAGAGTAAGAAAGAGAGGAAGGAGAAACCGGAGAAGAGGAAAAGAAAAAAGACAAAAACGCGCAGACAAAATAACCTACCGGAAGATCTGGTAGAAGAGTTCTCTATGACAGAAGAAGAGATGCACTCAGTAAGAGAAAGAGATGTTTCGAGCGCTGAGTTCGCGAGTTTGAAACATAAGTGTTGTGACTGTGTGCGGGAGTTTAATTCTAAGAAATTGTTAGAGGGTCACTTGAGCGGGAAACATTGTCAGAAAGACGCAAAATCCCACCAGTGCGACGTGTGCAAAGGTTATTTTATAAATAAGGAAAACCTAACGAAACACAAAAATCGACATTTAAGAGCGTTCCGATGTAAAGAATGTGGTCTAGTAACAACATTGAAAAGAATAATGCTGAGGCATGAGTGCGCCAAGCGTATAGAACGATATTCCTGTACCGAATGTGATAAGACTTTTTGTTCAAAATCAAAACTAGCGTATCATAAAAATGTATGCCACGAAGAGAAGCCGCAGTGCGACTGTTGTGGAAAAGTATTCGCGAATAAAATGACTCTGAAGTACCATTTGAAAATTCTACCCGCCAAAAAGGATGAAAAGCCAAAGGAAATGTTGTATATACCGTGCAAGGGGTGCGACAAAGTGTTTCACTCACAGAAGAGTTACAGAGCACATGTCGTAATACACGACGGCCTATCCTACCCGTGCCCTATATGCGGCAAACTATTCCAATGGAAGCGAAACCTCGCACGTCACGCGCGCAACCACCGCGACCGGGAAACAGGAACCACGCACCAGTGCCGCGAGTGCGGGAAGACGTTCTCGAGCCGCGACTGCTACAACAACCACATGAAGCTCAGCAAGCGGCACGTGCCCGAGAGCGCGCTCCTACACGCCTGCCACTACTGCGATAAAAGATTTGCAACCAAATGGTGTATGGTCGACCACATTGACTGGGACCATTTGAAACAGATCAAATATAGGTGCAAAGTTTGTTATAAGCCATTCAAAACAGCGAAAATAATGGTCGCTCACATGAACAATATACACGAAGGAAAAAACAAAAAGGAGCCGGATGGAGAGCATTTATGTGAGATCTGTGGTAAATCTTATAAGACAGAAAAACGTCTAAAAGGCCACGTATGGGCGATGCACACGAAACGTTCTAACACAAAGAGCTTCAAGTGCTCGTTATGTCCCGCTACATTCACATGGCAGACGTCCATTTATAAACATATGCGTATGATGCATGATAATAAACGAAAGCAACCCCGGGCTTTACCATCGAAGAAAGAAGAGCCATATGTGGAAATAGAATTAACGAACCCATACTTTCAGCAGAATATAATAAACCCAAGTTTACAACCGATAAATATAGTACAGAATATCGGTTAA
- Protein Sequence
- MKEIDINIEGYNVNGICVGCLNHNRNMFYRNEVKECFKTLADIDVPDGLSIQVCWECLARIKNIMQFKKQIVKSYDILINYSRKHTFLNSPYDLSQHATTNLITTKLVGYTSRDGDLEEIKQEKFESVADVKEEFDVDVFGETFIKDEDTFDLGAIDTHSSDDNTLLSDLVRDDGDNKSKKERKEKPEKRKRKKTKTRRQNNLPEDLVEEFSMTEEEMHSVRERDVSSAEFASLKHKCCDCVREFNSKKLLEGHLSGKHCQKDAKSHQCDVCKGYFINKENLTKHKNRHLRAFRCKECGLVTTLKRIMLRHECAKRIERYSCTECDKTFCSKSKLAYHKNVCHEEKPQCDCCGKVFANKMTLKYHLKILPAKKDEKPKEMLYIPCKGCDKVFHSQKSYRAHVVIHDGLSYPCPICGKLFQWKRNLARHARNHRDRETGTTHQCRECGKTFSSRDCYNNHMKLSKRHVPESALLHACHYCDKRFATKWCMVDHIDWDHLKQIKYRCKVCYKPFKTAKIMVAHMNNIHEGKNKKEPDGEHLCEICGKSYKTEKRLKGHVWAMHTKRSNTKSFKCSLCPATFTWQTSIYKHMRMMHDNKRKQPRALPSKKEEPYVEIELTNPYFQQNIINPSLQPINIVQNIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01562222; iTF_00357968;
- 90% Identity
- -
- 80% Identity
- -