Ccro005556.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- -
- Assembly
- GCA_905220415.1
- Location
- HG991968.1:1300407-1312411[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.001 0.08 13.8 0.3 2 23 27 48 26 48 0.96 2 13 0.00018 0.015 16.2 0.7 1 23 85 108 85 108 0.97 3 13 0.0001 0.0081 17.0 1.7 1 23 112 134 112 134 0.95 4 13 0.034 2.7 9.0 0.1 1 23 168 190 168 190 0.98 5 13 0.0024 0.19 12.6 0.6 1 23 244 266 244 266 0.95 6 13 0.00073 0.057 14.3 0.1 1 20 272 291 272 293 0.96 7 13 0.058 4.6 8.3 0.9 1 23 305 328 305 328 0.95 8 13 0.0029 0.23 12.4 0.5 4 23 336 357 334 358 0.87 9 13 6.7 5.3e+02 1.8 1.2 3 23 365 385 365 385 0.89 10 13 0.00017 0.014 16.3 1.0 1 20 390 409 390 412 0.94 11 13 0.0023 0.18 12.7 0.9 3 23 420 440 418 440 0.95 12 13 9.1e-06 0.00072 20.3 2.6 1 23 446 468 446 468 0.98 13 13 4e-05 0.0032 18.2 2.4 2 23 475 497 474 497 0.97
Sequence Information
- Coding Sequence
- ATGGCTTCAAGCACGCCCCAAACAGATTCAAACTGGAGTATCCTCAAATTGACCACAATAGACTTGGTTGGTGGGATTTATTGTAACATTTGCAATGAAACATTTGGTAACAAAAGGGAATATGACGCTCATTATATTAAACACACTGGAAGTAAGGACATTTTGTACACTTGTGTGATATGCCGGAAAGAGGTTGCGGGCTATCCTAGCTTCAGAGGCCACTGTTATTCGAGCCATGTGATCAAGGGGCGATATAAATGTGATAGCTGCGACAAATTCTTCTCCAAACTGCCAGCACTTCAGTATCATGTCAAAATTATGCATCCAAAGAGTTTTCGATGCTCCACTTGCAAAAAGAAGTTTCCGACGAAGAAAGAGTTGCGTTTGCACGAAGTCATACATACAGATAGTACCGGCCCAATCTCATGCCTGACATGTCATAAGGACATCAGCTCCATAGATATATGCAAGAAACATGTCGATCTACACTTGTCGTTCGAATACACATGTCCAATTTGTGAGGAAAATATACCTTCGAAAGAAAACTCGGCCGATCACTTGAGAAAACATTTTGGCAATGTCAGTTCAGAATCAGAGATAGACGTAGATCCGGAAGAGATGATAGAACAGCTCGGGGCAGTGTCTTGTATATTCTGTTCCATGATTTGCAAGAATCGTGTGGAGTTCGACGCGCACTTCTCGTGCGAGCACGGCGACGAAGATATCGTGTACTCTTGTATTGTGTGCGGGAGGCAGTTCGACAAATACTCATTGTTTCGTGCGCATATCAACAACCACTTCACGAACAATCGATTTGAATGCGACCTATGTCACACGTCTTTCCCGCGCCTGTCGCCGCTGGTGTCCCACATGGCGGCGTGTGCGGCGGGCGGGGTGCGGCGCCACAAGCTGTTCGCGTGCACGCGCTGCACGCACCGGTACGGCACCGAGCCGCGGCTGCGCGAGCACATGCGCGCCGCGCACGGCGTGCACGTGCGGCGCTGCCTCGAGCCCGGCTGCGGGAAAGTTTTCGACAAACTCCGCGACATGGTGGTGCACCAACGCCAGCACCACGCCAACGTGCAGAACTGGTGCCGGCAGTGCGGCCAGCTGTTCACCTCGCTGGTCTCCTGCGAGCAGCACCTCGACGCGCACAAGAAGACCACCTTCCCCTGCCCCGTCTGCAACCAGAGCTTCAGAGAGAAATACCTCCTCCTCAGACATCTGCCGCATCACTTCGAGACGGTTCTGCACCTGTGCAAAGTCTGCGGAAAAGTCTACAATGCCAAAAATCGACTGATCGAACATTTGAACTCGCACGCGGACACCAAGATTCACCGTTGCACCTACTGTCCCAAGACGTTCCCGAAGCTGTGGACGCTGCAACAGCACCTCAACACTCACACAGGATTGAAACCCAACAAGTGTCAGATCTGCGATAAAGCCTTCTGCAGCTACCCCAATTGGCGCAAGCACATGATACGATTCCACTCGGTCAGTTCCACCAGATCGATCGAAATAGACGAGAAGAATTCGAGAAATTACGAAAATAACACACTCAAACTCCATTGCAATGAGGATAGTCCAGTGAAATCTGTAATAGATCAATCCGGAATTGAAAATAATACAGTAAATACAAATAGAGATAACTGGGATGAATTTGTATTCTATGACCAAGAAGATTCCGAAATCAGTATGGAGGCGGAGAGCATGGATCAAGTTATCGAAAAACAATTACAGTTGTTTGGGAGCCAAGAGCAAAACGTCGAATATAAGCCTATGCCGATTGAAATACCACAAGCATGTCCACCAACAACAGAAACCTCAAGCGCCCTGCCATCAGAAGCGATCGTGCCGCTCGAGTACGGGCCGGAGTTCAGCTCCAGCAATCTGGACGAGTACATCCTGCCGCATATCGACCCGCTACTCACTATACGGAATGACCAGGTACTACCCACACAGGAAGCCAACTACATAACAATAGAGAGCGAACTCCAAGCGAGGGCCGTGTACTCCGAGCTGCAGCCGTTCGACCGCAAGTGGGAGCCGCCCATGATCACCAAGCTGTTCCCGGACTACTACAGCTACGATGAAGCCAGCAGGATCACCGTCAACGCGGATATATTCTAA
- Protein Sequence
- MASSTPQTDSNWSILKLTTIDLVGGIYCNICNETFGNKREYDAHYIKHTGSKDILYTCVICRKEVAGYPSFRGHCYSSHVIKGRYKCDSCDKFFSKLPALQYHVKIMHPKSFRCSTCKKKFPTKKELRLHEVIHTDSTGPISCLTCHKDISSIDICKKHVDLHLSFEYTCPICEENIPSKENSADHLRKHFGNVSSESEIDVDPEEMIEQLGAVSCIFCSMICKNRVEFDAHFSCEHGDEDIVYSCIVCGRQFDKYSLFRAHINNHFTNNRFECDLCHTSFPRLSPLVSHMAACAAGGVRRHKLFACTRCTHRYGTEPRLREHMRAAHGVHVRRCLEPGCGKVFDKLRDMVVHQRQHHANVQNWCRQCGQLFTSLVSCEQHLDAHKKTTFPCPVCNQSFREKYLLLRHLPHHFETVLHLCKVCGKVYNAKNRLIEHLNSHADTKIHRCTYCPKTFPKLWTLQQHLNTHTGLKPNKCQICDKAFCSYPNWRKHMIRFHSVSSTRSIEIDEKNSRNYENNTLKLHCNEDSPVKSVIDQSGIENNTVNTNRDNWDEFVFYDQEDSEISMEAESMDQVIEKQLQLFGSQEQNVEYKPMPIEIPQACPPTTETSSALPSEAIVPLEYGPEFSSSNLDEYILPHIDPLLTIRNDQVLPTQEANYITIESELQARAVYSELQPFDRKWEPPMITKLFPDYYSYDEASRITVNADIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00357929; iTF_01562219;
- 90% Identity
- iTF_00357929;
- 80% Identity
- -