Ccro021869.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- -
- Assembly
- GCA_905220415.1
- Location
- HG991981.1:6791915-6796261[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.086 6.8 7.8 0.6 3 23 35 56 33 56 0.90 2 21 1.7 1.3e+02 3.7 0.3 2 23 82 104 81 104 0.88 3 21 0.043 3.4 8.7 2.2 3 23 128 148 127 148 0.98 4 21 3e-06 0.00023 21.8 2.3 1 23 152 175 152 175 0.95 5 21 8.5 6.7e+02 1.5 0.2 3 20 182 199 181 201 0.85 6 21 0.37 30 5.7 1.4 1 23 208 231 208 231 0.94 7 21 0.0065 0.51 11.3 1.5 1 23 238 261 238 261 0.94 8 21 4e-06 0.00032 21.4 0.9 1 23 266 288 266 288 0.97 9 21 4.6e-05 0.0037 18.0 0.5 1 20 294 313 294 316 0.93 10 21 3.7 2.9e+02 2.6 0.5 3 23 371 392 370 392 0.95 11 21 2.6 2e+02 3.1 0.1 2 23 417 439 416 439 0.92 12 21 0.05 4 8.5 1.5 3 23 464 484 462 484 0.97 13 21 0.00051 0.04 14.8 1.4 1 21 488 508 488 509 0.96 14 21 0.03 2.4 9.2 0.2 1 23 550 573 550 573 0.96 15 21 1.1 84 4.3 0.4 2 23 599 621 598 621 0.94 16 21 0.0032 0.25 12.3 0.8 2 23 645 666 644 666 0.95 17 21 0.00037 0.029 15.2 0.0 1 23 670 693 670 693 0.97 18 21 0.83 65 4.7 0.8 1 23 697 720 697 720 0.96 19 21 2.9 2.3e+02 3.0 0.3 1 23 725 750 725 750 0.89 20 21 0.0012 0.098 13.6 1.8 1 23 759 782 759 782 0.97 21 21 0.0015 0.12 13.3 1.4 1 23 792 815 792 815 0.95
Sequence Information
- Coding Sequence
- ATGGACAACCCGGTCCCCTTGTCGGTCGTGAGACGAAACGCCGAAATTATCGTCAAATATTGTACCGTCTACCCATTCCGATTGCCAGAGAACACGGTAATGTGCGTGTTCTGTTGCGAGGATTACACGGATCCGTCGGAGTTCAGAAAGCACATGAACGCGGAACACGATACTATCAAAGTGAAAACTGTGTTCTCGCACTGCCCTTACGAAGGCTATTTGAAAGTAGACTGTACAGAACTACGCTGCCGACAATGTAATACGCCTTTCGACAAGATCGTAGACGCGGCACACCATCTGAACGATGCGCACGACTTGAAAATCAACTTTGATGTGCAATTGGGAGTGCAGCCCTTCAAGTTTGAAAATGATAAACTCCTCTGCGGGTTGTGTGACAAGAATTTTCCATGCTTGCGCCAACTCAGCAGGCATATGTCGAGCCACTACCAGAACTTTACGTGTGAAGAGTGCGGCAAATCCTACCCGACTAAAACTTCCTTGCAACATCACATAAACTTTACTCATATATCCGCAGCGAGAATATGTAGACGCTGCAAACAGACGTTTGGTTCTTTGGAAGCGAAACGTGAACACGTCGAGAAGAATTCTAAATGCTGGTCCTACCACTGTTCGATGTGTTTGCAACGGTTCATGAAATGGTCGGAAAAAGAGGAGCATTTGGTGAAAGTGCATGGCCAAGTGAAAAGGACGTATTCTTGCCCGGAATGCGCGCTGAAATTTGATACGCGATATACATACAAGAATCATTTTGTAACTACTCACGCAGCGCTTTGCTTCGTCTGTTCGTTTTGTGGCAAAAAGTTTAGTACCAAGCGTTTATTGGAACAGCATTTGGTTGTACATACTGGTGTGAAACTATTCGATTGTACTGTATGTTTCAAGTCGTTTCCACGGAAAGCCAATTTGAGCCAACACATGTGGATTCATAATGAAGTGAAGAGGTTTGAGTGGTCCAAATTGGAAATACGCGGGCGTAATGACGCTAAGAGAATAATACTCGTATATCAAACTCCGCAGCGTCGTAACGCGGAGCTCATCTTAAAATACTCAACAGCATATCCATTTAAAATGAGGTTCAGTCAAATACTTTGCGCGTACTGTCACGATGATTATGACTCGTTAGCCAATCTAAGATTTCACATGAGAGCCGACCATTTGAATTCCGACTTTAAAAACGTGTTCTATAGGACTAAGGATAATTTAGTTAAAATTGATATCACTGGTTTGAAGTGCACGCTGTGCGATCAGGACATACAAGACGTTGATACCCTAATGGGGCATCTGTCGCGAGAGCATAATAAGCCTGTTAGGTTCAATGCGCGGTTTGGCGTACTACCCTACAAACAAAATGATTGCAATCAATGGCTATGTGTGTACTGTCAGAAAATTAGCAAAGAGTTTATCCATTTCAACCGTCACATACTAACTCATTTTATGAATTATAGCTGCGATAAATGCGGAACCACTTTTGTGTCTGATCACGCGCTAAAAGACCATCATAGGCAGGTCAAGTGTTTGAGATCGGCTTACAAAGCAAGAAACGGCAGGATGCTCAAACCTCGTACGAATGCTGAGATCATACTCCAGTGTTCCACAGCATGTCCGTTTAGAACGTGGAAAAGCAATTTCAATTGTGTATTTTGTAGGGTACAAACGAATAACCCAAGTAGTTTGAGAGCTCATGTGGCCACTCAACATGAGAATTACGAAGTACAAACAGCCTTTTATAAGAAACTCGGCAAGGAATACTTGAAAATCGATATAACAGACTTACAATGTAAACTTTGCTTCATGCCCATAGAGAATTTCGAAACGTTGACGTACCATTTGAAGAATGATCATCAGCAACCGATTATCACTGATGCGCAGATAGGTCTGTTACCCTTTCGCTTGAACGATGGATCGATATGGAAATGTACCATGTGTCCGAATGAGTTTAAAGACTTTGTTTCTCTCAAGAAACATACGTCGGAACATTTTCAGAACTACGTCTGTGATACGTGTGGTGAGGGGTTTATCACGGAATCAGCGATGGTAGCGCACACGAAAATACCGCATGAGAATAAATACAACTGCAGTCGGTGTATAGCAACGTTCTCTACGTTACAAGAGCGAAATATCCATGTAAAAACTCAGCATACAACCACACCATACATGTGTGTCTACTGTAAAGATAAACCTCGCTTCGCTAACTGGGAGTTGCGTAAAAAGCACTTGATGGAAGTGCACAATTATAAGACTGGAGCGGATAAATATGAATGCTCGGCGTGTCAGAAAACGTTCAAGACGAGATCGGGGAAGTATAATCATATGGCGAGGACGCATAGAATGAAGAAGGACTCTGAATTGAACTATCCGTGCCATAGCTGCCCAAAAGCCTTTACTACTCAGCTGTTCCTAGATAAACATGTCGCGAGAAAGCATTTTGATTTATAA
- Protein Sequence
- MDNPVPLSVVRRNAEIIVKYCTVYPFRLPENTVMCVFCCEDYTDPSEFRKHMNAEHDTIKVKTVFSHCPYEGYLKVDCTELRCRQCNTPFDKIVDAAHHLNDAHDLKINFDVQLGVQPFKFENDKLLCGLCDKNFPCLRQLSRHMSSHYQNFTCEECGKSYPTKTSLQHHINFTHISAARICRRCKQTFGSLEAKREHVEKNSKCWSYHCSMCLQRFMKWSEKEEHLVKVHGQVKRTYSCPECALKFDTRYTYKNHFVTTHAALCFVCSFCGKKFSTKRLLEQHLVVHTGVKLFDCTVCFKSFPRKANLSQHMWIHNEVKRFEWSKLEIRGRNDAKRIILVYQTPQRRNAELILKYSTAYPFKMRFSQILCAYCHDDYDSLANLRFHMRADHLNSDFKNVFYRTKDNLVKIDITGLKCTLCDQDIQDVDTLMGHLSREHNKPVRFNARFGVLPYKQNDCNQWLCVYCQKISKEFIHFNRHILTHFMNYSCDKCGTTFVSDHALKDHHRQVKCLRSAYKARNGRMLKPRTNAEIILQCSTACPFRTWKSNFNCVFCRVQTNNPSSLRAHVATQHENYEVQTAFYKKLGKEYLKIDITDLQCKLCFMPIENFETLTYHLKNDHQQPIITDAQIGLLPFRLNDGSIWKCTMCPNEFKDFVSLKKHTSEHFQNYVCDTCGEGFITESAMVAHTKIPHENKYNCSRCIATFSTLQERNIHVKTQHTTTPYMCVYCKDKPRFANWELRKKHLMEVHNYKTGADKYECSACQKTFKTRSGKYNHMARTHRMKKDSELNYPCHSCPKAFTTQLFLDKHVARKHFDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -