Ccro022781.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- -
- Assembly
- GCA_905220415.1
- Location
- HG991988.1:4805754-4807288[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.1e-07 4.1e-05 24.2 0.3 2 23 64 86 63 86 0.97 2 11 5.7e-05 0.0045 17.8 1.3 2 23 94 116 94 116 0.95 3 11 7e-05 0.0055 17.5 0.6 3 23 124 145 122 145 0.90 4 11 9.7e-05 0.0076 17.0 2.3 2 23 152 174 151 174 0.96 5 11 1e-05 0.00081 20.1 0.9 2 23 181 203 180 203 0.94 6 11 0.15 12 7.0 0.6 6 23 214 232 210 232 0.93 7 11 0.086 6.8 7.8 2.6 2 23 238 260 238 260 0.91 8 11 1.3e-05 0.001 19.8 3.7 2 23 287 309 285 309 0.96 9 11 0.016 1.2 10.1 0.5 3 21 318 336 317 339 0.85 10 11 6.5e-06 0.00051 20.7 0.9 2 23 346 367 345 367 0.97 11 11 0.0069 0.55 11.2 0.3 3 23 375 396 374 396 0.98
Sequence Information
- Coding Sequence
- ATGGAGAATGAAACAGAGGAAATAACAGTGAAACCTGAATTTGTGCAAATAGAGGTAAAAGTAGAACCGTTTATCGTAGAATCGAATACAGACACGCAAAACATAAAAGACGCAGACGAAAGTGATTCCGACGAGCCAGAAGATGATTCTGCTGTTAAAGTGAACTCAAAGGGTAAGAGAAATAGAGTGCCATGTCCAAAATGCGATCGGACGTTAAAAAACCAAGCGAACTTGAAGCAACATCTACGAACTGTACACTTGGAAGGAGCTGAGACTGCCGAGTGTTCGCAATGCTTTCGTGTGTTCAAATCAAAAGGGTACCTCTGGAAACACATTCACGTAGTGCACAGGAACGATAAGGAAGTGAATTGCAAGGATTGTGGTAAGGTATTTCGAAACAAAGGTCGGCTAGACAACCATGTATATTACACGCATCGCGACGTCACTCCAATACCTTGTCCACATTGTGATAAAGTATGTAACGGACAGCGGAAACTCAAATTACACATACGTAACATGCATACAATACAGGACAACATTCAATGCCCGCACTGTGACAAAATATTTAGAAGCGAGTTGCTTCTGAAGAAACATATCATCTATACGCACGCGACAGACGATATAGAGTACAAATGCCCTTGCGATTTGATATTTATGTCATACAAACAATACAAGAATCACATGAACAACGTGCACCCAGTCAGACAACCGCGTTGCCTCATCTGCCATAAGTCATACAAAACTCCGGCTATCGCGAAAAAACACCTACTCGTGTGCCACAACATACCTGAAGACGATTTGAACAACCACATAACCTACAACGATTTACCCGAACTGATAAACAATCTTGAATGTAGTACATGCGCAATTTGCTTCAAAACATTCTCCAATAAAGTCTTGTTTCTACGTCACATGCGAACGACGCATCCTCCAAAGGAAGCGGAGCAAGCTTGCGATGTCTGTCAAAAGACATTCAAATCGGCGTTCCATGTAGGGGTACATAAGTATGCAGTACATTATACTAAGGGGAAACAGACATGTGATATCTGTGGTCGAGAGTTCGCGTCCAAACGGTATTTATCACGACACAAATTGACGCACGTTGTACATAACTCTGCGCTATGTAATATTTGTGAGGGGATTTATCAATCTGAAGCACATTTGAGGATACATATTAGACGAATACATGGAAAGACTATTATTGGTATTTGA
- Protein Sequence
- MENETEEITVKPEFVQIEVKVEPFIVESNTDTQNIKDADESDSDEPEDDSAVKVNSKGKRNRVPCPKCDRTLKNQANLKQHLRTVHLEGAETAECSQCFRVFKSKGYLWKHIHVVHRNDKEVNCKDCGKVFRNKGRLDNHVYYTHRDVTPIPCPHCDKVCNGQRKLKLHIRNMHTIQDNIQCPHCDKIFRSELLLKKHIIYTHATDDIEYKCPCDLIFMSYKQYKNHMNNVHPVRQPRCLICHKSYKTPAIAKKHLLVCHNIPEDDLNNHITYNDLPELINNLECSTCAICFKTFSNKVLFLRHMRTTHPPKEAEQACDVCQKTFKSAFHVGVHKYAVHYTKGKQTCDICGREFASKRYLSRHKLTHVVHNSALCNICEGIYQSEAHLRIHIRRIHGKTIIGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00357904;
- 90% Identity
- iTF_00358865;
- 80% Identity
- -