Basic Information

Insect: Colias croceus
Gene Symbol: -
Assembly: GCA_905220415.1
Location: HG991966.1:7870782-7876352[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.29 23 6.1 2.9 1 21 257 277 257 279 0.94

2 12 0.013 0.99 10.4 0.5 2 23 288 309 287 309 0.92

3 12 0.00011 0.0088 16.9 1.9 2 23 316 337 315 337 0.97

4 12 0.00014 0.011 16.5 2.4 1 23 343 365 343 365 0.99

5 12 9.8e-06 0.00078 20.2 3.7 1 23 374 396 374 396 0.98

6 12 6e-05 0.0047 17.7 0.7 2 23 403 424 402 424 0.96

7 12 0.00043 0.034 15.0 7.4 1 23 430 452 430 452 0.98

8 12 2e-09 1.6e-07 31.8 0.5 1 23 458 480 458 480 0.99

9 12 7.8e-07 6.2e-05 23.6 3.3 1 23 486 508 486 508 0.98

10 12 3.9e-05 0.0031 18.3 0.7 2 23 515 535 515 535 0.96

11 12 0.001 0.08 13.8 4.5 1 23 541 563 541 563 0.97

12 12 0.0028 0.22 12.5 4.5 1 23 569 591 569 591 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.29	23	6.1	2.9	1	21	257	277	257	279	0.94
2	12	0.013	0.99	10.4	0.5	2	23	288	309	287	309	0.92
3	12	0.00011	0.0088	16.9	1.9	2	23	316	337	315	337	0.97
4	12	0.00014	0.011	16.5	2.4	1	23	343	365	343	365	0.99
5	12	9.8e-06	0.00078	20.2	3.7	1	23	374	396	374	396	0.98
6	12	6e-05	0.0047	17.7	0.7	2	23	403	424	402	424	0.96
7	12	0.00043	0.034	15.0	7.4	1	23	430	452	430	452	0.98
8	12	2e-09	1.6e-07	31.8	0.5	1	23	458	480	458	480	0.99
9	12	7.8e-07	6.2e-05	23.6	3.3	1	23	486	508	486	508	0.98
10	12	3.9e-05	0.0031	18.3	0.7	2	23	515	535	515	535	0.96
11	12	0.001	0.08	13.8	4.5	1	23	541	563	541	563	0.97
12	12	0.0028	0.22	12.5	4.5	1	23	569	591	569	591	0.99

Sequence Information

Coding Sequence: ATGAATCTTGAAAATGACCATGATATAGCTGTTAGTAGTGAAAAAATGAACAGGCTTGATTTTGAAAGTGAAATACCTTTTACAACGATTGTTGAAATGAAACGGGAACCCACCCTAGAACTCTCAAAACGTAAAAATTCCAAGAGCTCTAAAAAGCAACCAGAAATCAATGTAACAGAAGAACCGTTTAATTCAATTAGTGATATAACGAAGGTCTGCCACATATGCTTCTGTTATAGTAATGAATTTATTTCTCTAGAAAGTGATGATCGAACACTAGCCAATATGTTTTCGTATATAACATCGCTCGAAGTATTGCCCAATGAAAAGGTTACCTTTAAAATATGTGAAACATGTCGCAACGATGTCGTATATTGTTATCAATTCAAAATTAAGTGTGAAAAATCATTTTTTATACTTCAAGAACCACTTCAACTAGTAAAGAAAGAATTAAAAAGTATAAATAATAAATCTAGAGTTACCAAGAACATAGAGAAAGAAACACAGACTGAAGAAGTACAATTACCACAAATAGATTGTCTGAGCAATGTTTCTCTCAGTCAGACAGAATGTAAAGAAGAACTTGATGATAGTGAAGAACATGTGGAATACTTAGACAGTGATTACTTCGATACAACTAGTTATGAAAAAGATAATTTTGATGCAAAGAACATCCAAATTGAAATAAAACTGGAAGATCCTAATTGGGAGGAAAATGTAAGACAAGACAAGGAACAATTGGAAGGTAAAAAGCAATCCAAAACCTATTACAATTGTGTTATATGTCAAAAGAACTTTCTGAAAGAGAAAACCTTGAAGGCTCATATCAAATGTCATAAAACAAAAAGTGACAATTCAGTTAGTTGTGGAAAATGTAAAGAAACATTTGGATCTGAACATGATTTGAATGTTCATTCAGCATTGCATACTAAGGGAAACAAGTGGACTTGTAATAAATGTTTGAAGGAATTCGAAGACCGTACTCGTCTCCGCCGGCACATTCGCCGTCACTTCGAGTGCAAGCGCTACACGTGTGACCGCTGCGACAAGCAGTTCGTGGAGCTGTGTGCGTTGCGGCGACATACGCGTGTGCACACTGGCGAGCGCCGCGACCGACCACACAAGTGCGCGCTGTGTGATAAGAGGTACGTGCACAAGAGCCAGCTCCAAGTACACATGCTGTCCCACTCTGGCGTGCGGCCATGCGAGTGCGACACGTGCGGCAAGGCCTTTCCATCTCGCCGACTGCTGGCGTCGCACCGCCTCGTGCATTCCGACCTTAAGCCATATGCGTGTAGCTATTGTGATAAACGTTTCCGTCACGAGTCGACCCGCAACACACACCACCGCACGCACACGGGCGAGAAGCCGTACGTGTGCTCTATATGCGGGAAGATGTTCATACAGAATAGCAATCTGACGCTGCATATGCGCACGCATACCGGTGAAAAGCCATATTCGTGTGAGACATGCGGGCGCATGTTCAAGTCAAGCTCGTCGCTCAGTAACCACATGCACACGCACACCGGGGAGAAACCGCGCGAATGCCCCGTTTGTGGGAAGAGGTTCGCGCGTACAAGCCTAACGAATCACATGCGTCGCCACACGGGGGAGAAGTTGCATGAGTGCTGCGCCTGCAAAAAGTCGTTCGTGACTGCGTCGCGGCTCAGGCAACATGCGCGCACGCACACGGGTGAAAGGCCGTTCAAATGCTCTCTCTGTTCTGCGCAATATACAAAAGAATCGTGCCTATTAAAACACATGAAAAGGCATGAGAGGGAAAAAAGTAAACACATAACTAAAAACGAGAATGTACTCTATGTTCACAAAGTACCAGTCATTGTGACGGACAAACTAGTCGTTACCAAAGAAAATGTTAAGGAAAATGATAAAAATGACCTAACGCTAGAAATGGCAGGAGACGGGCCTATAGAAGTTTCTGGAGAACTAATTTTAGAGGATGATAGCAATGTGAAAACAGAATTATTAGTTATTGATGATGGACAGAATAATATAAGGTATGAAAGCAGTGAAGTACTCAGCACTGATAATGGTTACACCAATGAAGATATAAATAGCATGAATATAGTTACAGTTAATGAAGGAGCATTAACTACTTCAGATATATTGGAAGGAACAACAGTTAAGCTGTATAGATTAGACCAAAATTTAGTACAAATTCACACTACAGGTGACAAAGTTACGATTAGTAAAATATCTAACAATATTACTAATTTTTAG
Protein Sequence: MNLENDHDIAVSSEKMNRLDFESEIPFTTIVEMKREPTLELSKRKNSKSSKKQPEINVTEEPFNSISDITKVCHICFCYSNEFISLESDDRTLANMFSYITSLEVLPNEKVTFKICETCRNDVVYCYQFKIKCEKSFFILQEPLQLVKKELKSINNKSRVTKNIEKETQTEEVQLPQIDCLSNVSLSQTECKEELDDSEEHVEYLDSDYFDTTSYEKDNFDAKNIQIEIKLEDPNWEENVRQDKEQLEGKKQSKTYYNCVICQKNFLKEKTLKAHIKCHKTKSDNSVSCGKCKETFGSEHDLNVHSALHTKGNKWTCNKCLKEFEDRTRLRRHIRRHFECKRYTCDRCDKQFVELCALRRHTRVHTGERRDRPHKCALCDKRYVHKSQLQVHMLSHSGVRPCECDTCGKAFPSRRLLASHRLVHSDLKPYACSYCDKRFRHESTRNTHHRTHTGEKPYVCSICGKMFIQNSNLTLHMRTHTGEKPYSCETCGRMFKSSSSLSNHMHTHTGEKPRECPVCGKRFARTSLTNHMRRHTGEKLHECCACKKSFVTASRLRQHARTHTGERPFKCSLCSAQYTKESCLLKHMKRHEREKSKHITKNENVLYVHKVPVIVTDKLVVTKENVKENDKNDLTLEMAGDGPIEVSGELILEDDSNVKTELLVIDDGQNNIRYESSEVLSTDNGYTNEDINSMNIVTVNEGALTTSDILEGTTVKLYRLDQNLVQIHTTGDKVTISKISNNITNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00357866;
90% Identity: -
80% Identity: -