Ccro015652.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- zfh1
- Assembly
- GCA_905220415.1
- Location
- HG991984.1:6656365-6669365[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.027 2.1 9.4 0.0 1 23 140 162 140 162 0.98 2 13 0.017 1.4 9.9 1.8 1 23 169 191 169 191 0.98 3 13 0.14 11 7.1 0.2 1 23 195 218 195 218 0.86 4 13 3e-05 0.0024 18.6 0.8 1 23 223 246 223 246 0.94 5 13 0.00022 0.017 15.9 0.6 2 23 253 274 252 274 0.97 6 13 5.3e-06 0.00042 21.0 2.3 2 23 285 306 284 306 0.97 7 13 1.3 99 4.1 0.4 4 23 315 335 313 335 0.89 8 13 0.0027 0.21 12.5 2.2 2 23 348 370 348 370 0.96 9 13 0.009 0.71 10.8 1.0 1 23 377 400 377 400 0.94 10 13 0.0077 0.61 11.1 0.2 5 23 409 428 407 428 0.95 11 13 6.2e-06 0.00049 20.8 0.0 3 23 439 459 438 459 0.97 12 13 7.2e-05 0.0057 17.4 0.6 1 23 464 487 464 487 0.95 13 13 2.8e-05 0.0022 18.7 0.9 1 23 522 545 522 545 0.94
Sequence Information
- Coding Sequence
- ATGGAAGTTCAAGAAAACAGCGAGCTAGATAAAGAATCGAATTCTAAAACTTCCGAAGAAAAAATGGATTCGAAAAGTGAAGAAGAAATTATGGTACCTAAAATAGAAATAAAAACAGAACCTCCTGACTACGATCTAATAGCTGATGCCTTGGTCAAACAAATCAAGTCTTCAACCTCGAAGGCAAAGAGCAAAAAAGACAGAAATCCAATCATTGAGCGGAGGAAAAAGATTATCATTTCGGATGACGAATGGGAACCAGAGAAGAAAGAGACTAAGCCCACACAGGGCTCATCTAAATCAACCGAAGAATACTACTCCTACGACATCCTCAACCAGATAGAGATAGTCACAATAACAGAAGAGGAGCGTGCTGTAGAATTTACCGAGACATATGAGTCACGGAAACACATGAACTATGTGTGCGATAAGTGTGCGGTCGGGTTCGTTGTCAAGGAGGCGTATGATGTTCACATGAAGTTGCATACACCAGAATCCGGATCTTTTGTGTGTGAGGTGTGTGAGACATACCTCAAGAGTGAAGATACACTTCATCGTCATAAACTCAGACATTACCGGCGATACAGGTGCATGGTGTGCAGCGTGCGCTTCAAGGACAAGGACGCAGCAGCAGGCCACGTGTCGTACTCGCATAGTGGCTTCACGTTCAACTGCGAGCAGTGCGGCTCCATGTTCAAACGGCCGCAATACCTCAGACGGCACATAGAGCAAATGCACACGAAGGCTACCCCCATGGAGTGTCCCGTCTGCCACCAGGTGTTCTACGAGAGTGGATGGTATCGGAACCATGTGAGGAAACACAACAAAGAAGTGCAAGACTCGAAAATAGTCCGTTGCAGGCAATGCGAGAAAACGTTCAAAGATAAAACCTACCTCAAACAGCACATGTTAATGCATGAGTCGAGAATGGACGTCGTCTGTATCGAATGTTCTACGAGCTTCCAGAATATACATTTACTTGATGCGCACTATAAGGAGGCGCACCCGGATAACTTTGTTGTGCGTCCAGACGAAGAAAATAGGTGCACGTCATGCAATCGTGCGTTCGAAACGCGCGCCAAACTGCACAGCCATATTATACGGATGCACGTAGACGGTGGTAAGAAGTACCAGTGCGACTATTGCAAGCGGCTGTACTTCTCGAAGGGCGAGGTGCGGTCGCACATCACGTGGTCGCACCTGCACGCCGGCGGGCACGCGTGCACGTGCGGCCGCGTGTTCCGCACGCCCGTGCGCCTGCGCGACCACGTGGCCACGCGCCACCTCGGCGCCGTGCCGCCGCGCGACAAGGCGTGCCCGGTGTGCGGCAAGGCGTTCGCGAACCAGCAGGTGCTGACGCGGCACATAAAGGGGCACGCGGGCGAGACGTTCCCGTGCGGCTCGTGCGGGCGCCGCTTCAAGACGCAGTCGTACGTGAAGGTGCACTACCAGCTGGCGCACCTGCACATGTCGCGCGCGGAGATCCGCAGACGGACCCGCCGCCAGCTCATCATGGTCAACGACACGTCTGAGCAAGCTCAACAGCAAAACGACAACGAAACGTTTGCGTGCGAGGAGTGCGGCAAACAATTCAAAACGCAGTCCTACGTGCGTATACATTACTACATTAAACATTTAAACATGACTCGAGAGGAGGCAAAGAGGAAATCAAAGGAAGTTAGAGAAGCCACAGCATCCATGGTATACAAGAATCCGCTCCAAATTGAAGAGGTTTTTGTGAAAACTGAAGCCGAGGATGGGGAAAAACCCATGGAAATACCCATGTTCGAAACATTCATAGATATACAGAGGGAGGGAGACTGCGAGACAGAGAAGGAAGATTGA
- Protein Sequence
- MEVQENSELDKESNSKTSEEKMDSKSEEEIMVPKIEIKTEPPDYDLIADALVKQIKSSTSKAKSKKDRNPIIERRKKIIISDDEWEPEKKETKPTQGSSKSTEEYYSYDILNQIEIVTITEEERAVEFTETYESRKHMNYVCDKCAVGFVVKEAYDVHMKLHTPESGSFVCEVCETYLKSEDTLHRHKLRHYRRYRCMVCSVRFKDKDAAAGHVSYSHSGFTFNCEQCGSMFKRPQYLRRHIEQMHTKATPMECPVCHQVFYESGWYRNHVRKHNKEVQDSKIVRCRQCEKTFKDKTYLKQHMLMHESRMDVVCIECSTSFQNIHLLDAHYKEAHPDNFVVRPDEENRCTSCNRAFETRAKLHSHIIRMHVDGGKKYQCDYCKRLYFSKGEVRSHITWSHLHAGGHACTCGRVFRTPVRLRDHVATRHLGAVPPRDKACPVCGKAFANQQVLTRHIKGHAGETFPCGSCGRRFKTQSYVKVHYQLAHLHMSRAEIRRRTRRQLIMVNDTSEQAQQQNDNETFACEECGKQFKTQSYVRIHYYIKHLNMTREEAKRKSKEVREATASMVYKNPLQIEEVFVKTEAEDGEKPMEIPMFETFIDIQREGDCETEKED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01562204;
- 90% Identity
- -
- 80% Identity
- -