Ccro014617.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- salm
- Assembly
- GCA_905220415.1
- Location
- HG991972.1:10447275-10448738[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.3e-05 0.0018 19.0 0.1 2 23 160 181 160 181 0.98 2 11 3.4e-06 0.00027 21.6 0.7 1 23 187 210 187 210 0.95 3 11 6e-05 0.0047 17.7 0.7 1 23 217 239 217 239 0.98 4 11 0.00025 0.02 15.7 2.8 1 23 245 267 245 267 0.97 5 11 3e-05 0.0024 18.6 0.8 1 23 273 295 273 295 0.97 6 11 4.6e-06 0.00036 21.2 3.7 1 23 301 323 301 323 0.97 7 11 2.3e-06 0.00018 22.1 0.6 2 23 330 352 330 352 0.96 8 11 0.0032 0.25 12.3 0.9 2 23 358 376 357 376 0.86 9 11 0.0001 0.008 17.0 0.9 1 23 382 405 382 405 0.92 10 11 0.8 64 4.7 0.3 1 23 411 436 411 436 0.90 11 11 2.7e-05 0.0021 18.8 3.5 1 23 442 465 442 465 0.97
Sequence Information
- Coding Sequence
- ATGGAAAATATTTGCAGAATTTGTCTTGAGAAACCCGGCGTAACATCTCTTTTTACAAATGAATCAAATGAAATACGTTATTGTGACAAAGTTACTCGTTTAGTAAATATATTGATATCAGAAGAAGATGGTCTACCGACGAAGTTATGTGAGGAGTGTACAATCGATCTTAACTCGTCGTATCAATTTGTTCTAAAATGTGAGGCTTCGGACAAAGCCTTACGCTGCGTTAGCCCGATTGATTTGTTCTCTTCCATAGAATTAAAAATAGAAAAAGAAGAAGTTAACCTTTGTGATACAAAGTTAGATGACATTCTGGATGAGGGACATTGCACAGAACATGATTTTGATTTCAAACCATTGCTAGAACCTACGACTGATATAAGTAATACAGAGAACGATGCAACAGAACTGTCAAAAAGTGAACAGAAAGCGGTAAGAAAAACTCGTAAAAAACAGAGCAACGGTGGTCCAGCTCAATGTGTAGTCTGTGGTCTTATGACGAAAAGTCAGTCAGCTCTAGAAATACACATGCGTGTACACACAAAAGAGAAACCATTCGCCTGTGACCACTGCGACGCGAAATTCCCCTCCAAAGGGAATCTCAAACGCCACATTGATGTTTATCATTCTGTGAGAGAACGTAAATTCACTTGTGAAAAATGTGGCAATAGCTTCTTTAGTAAAAATGATATAATAACGCACATACGAGTTCACACAAATGAGACGCCATTTGCTTGCATGTACTGTCCGAAACGGTTCAAGCAATTGACTTCAAGGAACCGCCACCAAACCACTCACACAGGTTTGAAACCCTACGCTTGTCCAATTTGCAACAAGAAATTCGCGCACCGCAATCTCGTCGTCAAACACCAGAGTGTCCACAGTGATGAGAGGAAATTCACATGTCATCTGTGTAATAAATCCTTGAAAACAAAATCGAGTTTGCGAGTTCATATGAGCCTTCATAAAAACGAGAAAAGGAATGTTTGCAGTTTTTGCGGCATGACATTCTCCATGAAAGGCAACCTGCAGACGCACATAAGAAGAGTGCATTCAGAGAAATCAGGCCAGTGCACTATATGTTTGAAAACATTCTCCAATTTAGAGGTGCACTTACGGAAGCATACTGGGGAAAGGCCTTACACATGCCCCACTTGCAACATGTCCTTTGCTGTAAAGGGAGCATTGAAGTACCATATGTTCTTCAAACATGAAAACACAGATAAATTTAAATGTTCAATAGGCGATTGTATGAAAACCTTCCCAACGGCTCCTAGATTAGAATTCCATTTATTAAAACAGCATTCAAAACATACCCCTTATGTGTGTCAGCATTGTTCCAAAGGTTTCTACCGAACCAGTGATTTATCAAGACATTTGAAAAACAGTCATATGGATGTTAATATGAAGTCATCGTTAAAAACTATCTCAAACACAGTATTCACAATAGCACAAACATAG
- Protein Sequence
- MENICRICLEKPGVTSLFTNESNEIRYCDKVTRLVNILISEEDGLPTKLCEECTIDLNSSYQFVLKCEASDKALRCVSPIDLFSSIELKIEKEEVNLCDTKLDDILDEGHCTEHDFDFKPLLEPTTDISNTENDATELSKSEQKAVRKTRKKQSNGGPAQCVVCGLMTKSQSALEIHMRVHTKEKPFACDHCDAKFPSKGNLKRHIDVYHSVRERKFTCEKCGNSFFSKNDIITHIRVHTNETPFACMYCPKRFKQLTSRNRHQTTHTGLKPYACPICNKKFAHRNLVVKHQSVHSDERKFTCHLCNKSLKTKSSLRVHMSLHKNEKRNVCSFCGMTFSMKGNLQTHIRRVHSEKSGQCTICLKTFSNLEVHLRKHTGERPYTCPTCNMSFAVKGALKYHMFFKHENTDKFKCSIGDCMKTFPTAPRLEFHLLKQHSKHTPYVCQHCSKGFYRTSDLSRHLKNSHMDVNMKSSLKTISNTVFTIAQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01562183;
- 90% Identity
- iTF_01562183; iTF_00357876;
- 80% Identity
- -