Ccro004504.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Colias croceus
Gene Symbol
L
Assembly
GCA_905220415.1
Location
HG991959.1:7032076-7040876[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 1.3e-06 0.0001 22.9 1.7 1 23 57 79 57 79 0.99
2 17 0.55 43 5.2 5.8 1 23 85 107 85 107 0.97
3 17 7.3e-06 0.00058 20.6 4.1 1 23 113 135 113 135 0.99
4 17 2.3e-05 0.0018 19.0 0.1 1 23 141 163 141 163 0.98
5 17 3.2e-06 0.00025 21.7 0.1 2 23 179 201 178 201 0.96
6 17 5.4 4.3e+02 2.1 0.2 9 23 228 243 224 243 0.93
7 17 0.26 21 6.2 0.0 3 23 298 318 297 318 0.97
8 17 0.042 3.3 8.7 0.1 2 23 332 353 331 353 0.91
9 17 8e-05 0.0063 17.3 1.8 1 23 361 384 361 384 0.91
10 17 0.024 1.9 9.5 0.1 1 23 389 412 389 412 0.92
11 17 0.0051 0.4 11.6 0.2 1 23 472 496 472 497 0.94
12 17 0.00017 0.014 16.3 0.1 2 23 546 567 545 567 0.96
13 17 0.05 4 8.5 0.0 1 23 575 597 575 597 0.97
14 17 3.7 2.9e+02 2.6 1.1 2 23 605 626 604 627 0.92
15 17 0.45 36 5.5 0.4 3 23 705 725 704 725 0.95
16 17 0.0048 0.38 11.7 0.1 1 20 733 752 733 755 0.95
17 17 0.057 4.5 8.3 0.2 1 23 762 784 762 784 0.96

Sequence Information

Coding Sequence
ATGGTAGAGGCACTGGGCAGCGTGGGCAGCACGGCGGGCAGCTCCTGGCCCTCTTCCACGCCGGAACCCTCGCCGTCTCCCGCCTCCACACCAACGTCAGCTGACGCGGTAGACCCGGAGGTGGAGGGCGAGCCGCCCTTCACGCTCGGCGCTACGGAACACACCCCCTATCAGTGCCAGTTCTGTGATAAAGCCTTCCCAAGGCTTTCTTACTTGAAGAAACATGAACAGACTCATTCAGATCAAATGCCGTTTCGTTGCGAATTCTGTTCGAGATTATTCAAACACAAGAGATCTCGTGACCGCCACGTCAAACTGCACACTGGCGATAGAAAATACCGATGCGCACACTGCGAATCAGCGTTCTCCCGCAGCGACCATTTAAAAATCCACATGAAGACGCACGACAACCAGAAGCCGTTCCAATGTACGGTATGCAACCGTGGATACAACACTGCAGCAGCGCTCACATCCCACATGCAAGGTCATAAGCGAGATCGTGATGGGCGCGAGGTCGACAGACGAAGAGCTTTGCGATGTGTCCGCTGCGGAGAGAGCTTTCGGCGACCTGATATGCTGCAGGCACATATGACAACAGCTCATGGCGCTATGACTCCACCTCGTCGCGTCGCCTCTCAACCACCGCCTACACTTCTCGCGTGTATTTATTGTACTCGTGATACATTCACTAGCATGGAACAATTGCAGCTTCATGTGAGAGCATCACATTCGGCCCTATTAAATGGCGAAGGACCAACAGTTACTGTAGAACAACCGACTCCAACGGATTTAAGCCGTCGCGGATCAGAAGGAACACCTCCAGTGAAACGGCCTAGATCAAGTTCAGGATCAGCTACACCTCAGACAGTTCTATCACCGAGTACGTTGCTATGCAATCAGTGTGATGCGGCTCTACCAGATTTTGAAGCTTTCCGAGCACATTTGAAAGGTCACCTTGAAGAGGGTGGAAACTTGGCACAAACAAGTCCAACTCCCTGCTTACATTGCGGAGCGACATTCACAGATCCGGTCGCCTCCGAACGTCACCTAGCAGCACATTATTTGGCAGTGTCATGTGAATACACATGTCACAGTTGCGCTCGAAGTTTTTCCTCGCCTGATGACCTTCAAAAGCACCTTTTCGATCAACATGCAAATAGCCTGTACCGTTGCACACTTTGCAAAGAGATTTTCGAATCAAAAGTTGCAATCCAGGTCCATTTCGCCGTAGCACACAGCGGTGAGAACAAAATCTGGGTGTGTCGTTCCTGTGGCTCCAACGGGGGTGCGTTACGTTCTGAAGCGGAGTGCACTGCGCATGTACGCAACCGGCACGCAGCTGCGCGATGCGCGTGCGGTGCGGTGGTGGCCGGCGCAAGAGCTCTGCGGGAACACGCGGCTGCGCACCATAGCTATAGGTGTCCAGTCCCTGCGTGTACTGATACCTTCGCGGTACAATACTTGCTAGAGCGGCACATGCAAGTCCATCATACTATTCCGCAGGACGTCAACGGAGACATACCTCGGGCCAAACAATCGGAAAACAACAACGCTATAGAAAACGATTGTTCGCCGTGTCTCACCGGCGAGAACCAAACAGAGGAGCGTAGACGCAAAAACGGTGCGGTTGCGTTGCAGTGCGCGTACTGCGGCGAGCGCACCCGCAGCCGCGCTGAACTGGAGGCACATACACGCGCTCACTCGGGCAATACGGCTGCAAGGCATAAGTGCCTTATATGTGACGAAGTATTGCCGTCCGCGGCTGTGCTCGCGGAACACAAGCTTACACATTGCAAGGTAGTCGCTGGAGACACATGCGCGCGATGTCGCTCGCGGCTAACATCAGAAGAAGCGTACCTAACGCATATGGCGCGTCACCACCCCGCCCTCCCTGCGCCTTGTATCATTTGTCGACAAACTTTGGCTTCAGAAGCTGAAGCTCGACTTCACGCAAGGTTCCATCTCCGACCTAATGAGGATGAGCAGCGTTGTGCTATTTGTTTAAAAACCTTATCAGAGAGTGAAACCGGTGAAGGCGTTCGCGCATGTTCTTCGTGTTATGCGAGACATGCAGCGCCGCGTCCTCCCCCGCCGCCCACCGCAGACAATGATTGCAGACTATGTCGGCGTTCCCTGGAATCGCCAACTCGACTGCAGACGCATCTCATAGAACACACTTTCGCTGGCATCGGCTCCTTCAGTTGCTACTTGTGTTCTGCCGTATTCACGAGCGCCGCTGGCTTGCAACGTCACTTACCCGAACATCCCGCTGCTTCGCGACCTTATGACTGTGCTCGTTGCGGCCTCAAGTTCTTCTTTAGAGCGGAACTAGATAATCATGCGTTAATTCACTTAGAAGAAGCCGAATTAGCTCAAAGAGCGTTCTATGAAGCTTACGCTAGAGGAGCTGCTTCGGCTTGGGCTGCGTTGCAATCTGATCCGTCTCCAAATACCACTACGGCTCCGCCACCAGAAGTTCAAGTGAAACAAGAGAATGAAATCAAAGAAGAGAGAAACGACGAATATATTGAAGTATCGTCGCCACCTCCTGTGCGGCCAAGGTCATCCACACCTGTACCTCCCGTTGTGAAACAAGAGAAGCCAGATGAAGATTAA
Protein Sequence
MVEALGSVGSTAGSSWPSSTPEPSPSPASTPTSADAVDPEVEGEPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDRDGREVDRRRALRCVRCGESFRRPDMLQAHMTTAHGAMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRASHSALLNGEGPTVTVEQPTPTDLSRRGSEGTPPVKRPRSSSGSATPQTVLSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGNLAQTSPTPCLHCGATFTDPVASERHLAAHYLAVSCEYTCHSCARSFSSPDDLQKHLFDQHANSLYRCTLCKEIFESKVAIQVHFAVAHSGENKIWVCRSCGSNGGALRSEAECTAHVRNRHAAARCACGAVVAGARALREHAAAHHSYRCPVPACTDTFAVQYLLERHMQVHHTIPQDVNGDIPRAKQSENNNAIENDCSPCLTGENQTEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGNTAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCARCRSRLTSEEAYLTHMARHHPALPAPCIICRQTLASEAEARLHARFHLRPNEDEQRCAICLKTLSESETGEGVRACSSCYARHAAPRPPPPPTADNDCRLCRRSLESPTRLQTHLIEHTFAGIGSFSCYLCSAVFTSAAGLQRHLPEHPAASRPYDCARCGLKFFFRAELDNHALIHLEEAELAQRAFYEAYARGAASAWAALQSDPSPNTTTAPPPEVQVKQENEIKEERNDEYIEVSSPPPVRPRSSTPVPPVVKQEKPDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00430847;
90% Identity
iTF_00771246;
80% Identity
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