Ccro021583.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- -
- Assembly
- GCA_905220415.1
- Location
- HG991981.1:2182756-2194566[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.039 3.1 8.8 0.1 3 23 110 130 108 130 0.97 2 14 0.0013 0.11 13.5 2.7 1 23 224 246 224 246 0.99 3 14 4.1e-05 0.0033 18.2 1.1 1 23 252 275 252 275 0.97 4 14 0.012 0.98 10.4 3.9 1 23 280 303 280 303 0.94 5 14 2e-06 0.00015 22.4 0.6 2 23 458 479 457 479 0.98 6 14 0.00018 0.014 16.2 0.9 1 23 485 507 485 507 0.99 7 14 0.077 6.1 7.9 6.9 1 23 561 583 561 583 0.96 8 14 0.00049 0.039 14.8 3.8 1 23 619 641 619 641 0.98 9 14 5.1e-05 0.0041 17.9 2.0 1 23 647 669 647 669 0.98 10 14 0.00046 0.036 14.9 2.1 1 23 678 700 678 700 0.98 11 14 0.00011 0.0084 16.9 0.6 2 23 746 767 746 767 0.97 12 14 0.0054 0.43 11.5 3.7 1 23 784 806 784 806 0.96 13 14 2.1e-06 0.00017 22.3 0.7 1 23 812 834 812 834 0.98 14 14 4.5e-07 3.5e-05 24.4 3.1 1 23 840 863 840 863 0.98
Sequence Information
- Coding Sequence
- ATGGTTGAACCAGTAATATCAGATTTAGATCCACTGGGTTCTTATTCATATACACATTATAATTATAATCAATATACATCTGGAAATGGTCAATATCCACATCAAATAAAAGCAGAACAGTTAACTTATCTTCATAGTAAAGAAAGTTCAAATATACCAAATAGTAATGAAACTAACCAATCAAATAATGTGACAAAATGGCCAGATCAAAACACAGATACAAGCGTTGATATCAAGCCAGAGATAGGTAAAGTAAAAGTGAAAAAGGAGAAGAAGAACGGTTTCGTCTCGGAAAAGATAACGGAAGACGGTTTTCCGTTTTACGGCTGTGCTGTGTGTAATATACGTTATTCTACACTAAGAGAATTAGATTCGCACGTCACTACACACAAAGATAGAATAACAAGCTACGATTTGAGGATAAAAAACCAGTTGAAGAAGAAAAAACTAAAAAAGGAACAAAAGAAATTGAAGAAGCTGAAAAAAGAGAAGAATTTAGATCCGGAAATCAAGCCAGAAGATGGGTATATAGGTAACGAAAAGGCATCAGAATTTACGAATAATAACGAAACGGAAAAGGAATGTAAGTTCGATCCTAATGACAAGAATGTGAGCAATGAATCGTTGGATGGTGAGAAAAAACAAGAGCTAATGAATTTACAGAAAATTTACAAATGTTTTGCGTGTCAAAAGCAGTTTTCGTTGAGTTATTATTTGAAGCTACATGTAAGATCACATACAGATGAGAAACCCTACACTTGTGAACAGTGTGGCCAATCCTTCATCACGGCAAGCAAACTGGGGAGGCACAACAAGAGGTTTCACCTCTCCGTTCAGTATCAGTGTAGGATATGTTACAGACAGTTTTATAGGTTCGAACTTTTAACACGGCATTTTGATAAAAAACACGCAGAAGACAAATTGGAAGGAGAGCCTTATGATTTCAACGCAATACTACCGTACCTAAAGGAATTAGAAGAGCAACTACGCGAGAAACAAGAAGCGGAAAAGGCTAAGCCGAAAACGGAGGATTTATGGACCAACGAGTGGCCGAACATGCCCTCGAAGGACCAAGTGAAGGACCACTCAAAGGACCAAGGACCGGGCCAAGACCAGGAATGTGCGGAAGTTAAAGCGTGCAAATTGGAGATAGAGATAGAGGAAGTCAAAGTTTCTATGGACGGGGTGGAGATTAAACAGGAGAGTGAGGATCAGAACGACTGTGTCGATAATGATGGGATTGTTGACGATGATGTAAGAGACGATCTGAGTGTTAAGGATAACGACTCCGACTCGGACTACTTCCCCTCAAACACTTGGACGTCCAAAATCGACTCCCCTCCCCCCTCCCCACCGCCCACGACCGGCACAAAGTGTCCCGTGTGCGACAAGCGACTGAGCACCGCGTCGTACATGCGTGTACACATGCGCACGCACACGGGCGAGCGGCCGTACAAGTGTTACGTGTGTGGGGTCGGCTTTATCACCGCTAGCAAGATGCATAGACATGTGCTGACACATCCAGAAGCTATTAACGATGACAATGTAAAAAAAGAAAATGTAGATGCAGAAATAAAATGCGAAGGCGAGGAGGATAGTAAACAGGAAGTGAAAAAGGCTGTGAAGAAGCTTTCCAAAAAGCTAACCGAGAAAAAGACGAAAAAGTACAGAAAGAGGCCGCACGCCTGCGAGTACTGTCACAAGCGGTTCCTGCATTTGGACACTTTGCAGATACACAAAAAATCCCACGAGGGCGAGCAGATCCAATACCGCTGCCACTTCTGCCTGCTCGAGGTGCAGTGTGCAACGAGCCTACACGCGCACGAAGCCACGCACGCGGGCCAAGCGCGCCCCTACGTGTGTAGCGTGTGCGGGAAGTGCTACAAGAAGCGGGAGAGCATGATATACCACAGGAAGAACCACAAGCCGGAACGAGAGTATATATGCGATATATGCACCAAATCGTTCAGCGCTCGATGTAAACTGCAACGGCATATAATAAGTCATAGCGTGGATAAATATATATTGAAATACGAGTGTCCTGTCTGTGCGCACATGTTCAATACTAAGTATCATGTTCAAATGCATCTAGCTACGCATCAGAGGGAGGGCGTCATCCAAGAAGAGAACCGCAACGAAATCCTAGCGATGGTGTTGCAAAACGCGCGAAAAATACCCAAAAAGGGGGAAACGCACAACCTCTCTGACGTCATACCCTCAGACGAACGAAGCCGCGTGTGCAACATATGCGGCGAAGTTTTCCAACATTTCTACTATTTAGAGGAACATCTCAAAAGTCACGGGTCAAAAATAGCGATAGAAAACATCGATCAGGAAGAGGAAAAAAAATATATTTGCAATGTGTGCAATAAGGGCTTTAAACTGCACTATTATTTAAAACTACACAGTTTCACACACACGAAGGAAAAACCGTTTATCTGTCAGCAGTGTGGAAAGGGCTTTATCACTAGGGGAAAGTTGAAAAGGCATTTAGAAACTCACACGGGCTTGAAGAAATATCAATGTCATATTTGTTACAAATTCTTTACGAGGCCGAGTTATTTGAGAATTCACGTGCGGACGATACACGGGACGCAGTTGGTTAGACTCGACTCGTTCGGTTTGGAGTCGCATATGCATGCGTAG
- Protein Sequence
- MVEPVISDLDPLGSYSYTHYNYNQYTSGNGQYPHQIKAEQLTYLHSKESSNIPNSNETNQSNNVTKWPDQNTDTSVDIKPEIGKVKVKKEKKNGFVSEKITEDGFPFYGCAVCNIRYSTLRELDSHVTTHKDRITSYDLRIKNQLKKKKLKKEQKKLKKLKKEKNLDPEIKPEDGYIGNEKASEFTNNNETEKECKFDPNDKNVSNESLDGEKKQELMNLQKIYKCFACQKQFSLSYYLKLHVRSHTDEKPYTCEQCGQSFITASKLGRHNKRFHLSVQYQCRICYRQFYRFELLTRHFDKKHAEDKLEGEPYDFNAILPYLKELEEQLREKQEAEKAKPKTEDLWTNEWPNMPSKDQVKDHSKDQGPGQDQECAEVKACKLEIEIEEVKVSMDGVEIKQESEDQNDCVDNDGIVDDDVRDDLSVKDNDSDSDYFPSNTWTSKIDSPPPSPPPTTGTKCPVCDKRLSTASYMRVHMRTHTGERPYKCYVCGVGFITASKMHRHVLTHPEAINDDNVKKENVDAEIKCEGEEDSKQEVKKAVKKLSKKLTEKKTKKYRKRPHACEYCHKRFLHLDTLQIHKKSHEGEQIQYRCHFCLLEVQCATSLHAHEATHAGQARPYVCSVCGKCYKKRESMIYHRKNHKPEREYICDICTKSFSARCKLQRHIISHSVDKYILKYECPVCAHMFNTKYHVQMHLATHQREGVIQEENRNEILAMVLQNARKIPKKGETHNLSDVIPSDERSRVCNICGEVFQHFYYLEEHLKSHGSKIAIENIDQEEEKKYICNVCNKGFKLHYYLKLHSFTHTKEKPFICQQCGKGFITRGKLKRHLETHTGLKKYQCHICYKFFTRPSYLRIHVRTIHGTQLVRLDSFGLESHMHA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00357870; iTF_01562177;
- 90% Identity
- iTF_00357870;
- 80% Identity
- -