Ccro009948.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- ZNF212
- Assembly
- GCA_905220415.1
- Location
- HG991973.1:6736599-6750241[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.67 53 5.0 1.1 2 20 7 26 6 28 0.86 2 14 0.034 2.7 9.0 0.0 2 21 34 53 33 54 0.94 3 14 0.15 12 7.0 0.3 1 12 204 215 204 224 0.90 4 14 0.69 54 4.9 0.8 1 19 348 366 348 366 0.97 5 14 3.6e-05 0.0029 18.4 1.5 1 23 377 399 377 399 0.98 6 14 0.0048 0.38 11.7 0.1 1 23 406 428 406 428 0.96 7 14 0.00011 0.0084 16.9 1.5 1 23 443 465 443 465 0.97 8 14 2.9e-06 0.00023 21.8 0.2 3 23 515 535 513 535 0.97 9 14 0.0056 0.44 11.5 4.5 1 23 551 573 551 573 0.98 10 14 1.3e-06 0.0001 23.0 4.5 1 23 579 601 579 601 0.98 11 14 0.0008 0.064 14.1 5.5 1 23 607 629 607 629 0.98 12 14 8e-06 0.00063 20.4 0.4 1 23 635 657 635 657 0.98 13 14 0.00022 0.017 15.9 0.1 1 23 661 683 661 683 0.98 14 14 0.00015 0.012 16.4 0.1 1 23 691 714 691 714 0.98
Sequence Information
- Coding Sequence
- ATGGAAGACCTAACGATTCAATGCCCTTTTTGTTGTACTGCTACGTTCAGCTCTAAAGAATCATTAGTTGATCATTTGTCTCACATCGTCGAAAGATTAGTATGCCCAATATGCAAAAACAGTATCTCATCATTAGATAGTCTTATAACACACTTAAAGTATGATAATTGTATAGAAACTATATTATTATGCCAGTATACAAATGGAAATAGTAATAAAGTAGAGCAAACTGATGTTAACTTAGATTTTGAGGAAAATGAAAATGTTGAACAAAATGAAAACTGTATAGAAAACAATTCAGAAGACATTTCTGAAGTCAGTAAAATATATTCAGAATTATTAAGTAAACATATAGATATAAAAACACAAGACATAAAACTTTTAAAGGAAAATGGAAATAGATATTTACTAGTTACAAATAATGACTCGGCACTCAATGGAGGGGCTACACTAGTATCAAAACAAAATAATGACGGAACAATTTCCTTCAGTATTCAAGAATCCAATGTGTCCGAGGCTAATGATTTAGTGGAAAATGAACAAATGGATGCCAAAACAGAAAATCAGAACCAACTGGATTTGGAGAATAGTGATAATATAGAAGAGATGTACAGCTGTAACACATGTGGCGTTTCATTTACATCAGTGATGGATCATATACAAAACTACCATAACGATGAGGATGTTGTCGTTGAGGAACCACTAGAGGATGGCACTACAGATTCAGTGGCCGTGGAATACGAATCGGTGCCAGAGGAGGCTGTGGTCGAGAAGCAGGCTTCACGGAGAATGATCACAGACACCGGCGATATTATAGAAGAACCCCTTAGACAAAATGAGCAAAATGGACAAGTCAGAGTTATAATTCCTATAAATAAAGATGGTGATGTGAAATTGGAGAATAAACAATACATCCAAGTTGATAAACTGGGAAATAGTATTGTTAAGGAAAACGCACCAGTTGTTGATACAAGTAATTTGAAATTTCATAAAGTCGTGATGAAAACGATGGAAGCACCAAATGGAAATAAAGTAAAAGTGTATAACTGCACAACTTGCAATTACCTGGTATCCTCGCTGTCGGAATTCAGAAGTCATCCGTGCAAAAATCGTGTTATTTCAGAAAAATATATTTGTCCCCATTGCTCCGTTATGTATGACAACCCAAAATCTTTATGTGCGCATATGAAAGTTCATAAAGAGAAACCAGCGACATTCGCGTGTCCTGTGTGTCCCGATGTTTTTGACGAACCGAATTCTTTGTGTAACCATATAAATGAGCATAAAGGAAATTCAGATACATCATCTCTATTGGAACCAATTAGGTTTGACTGTGAAGTATGCAGTACAAAATTTCCAACTAGCAAATCTTTAAAATTACACAAACGGATGCATGATCCTATAAAGGCTCGACCCATAGAACCACCGGTAGAGACAACAGAGGGCTCCGATAAATACCTCTGTTTAGTTTGCTTCAAGTTAATACCCGTAGACTATAAGGTTATACACCAGAACTCGCACAAGGTCAGCAGCGAAATGATATGTGATATATGCAATAAGAAGTTCCCCAATAAGGAGTATCTGGAGATGCACATGAATGTACATAATATGGATAAGGTGACAGTGGGCAAACAGGACAACACGCTGCCCTATCACTGTTTGTATTGCAATCGAAAATTCGCGCGGCCGCATGAGAAAGTGAAACATGAAAGGATACATACGGGTGAGAAGCCACATTCGTGTGAAATCTGCGGCAAATCTTTCCGTGTGTCGTATTGCCTCACGCTACACATGCGCACGCACACCGGCGCGAGACCGTACGAGTGTCCACACTGTCCTAAAAGGTTCAAAGCGCACAGCGTTTACAACCACCACCTGTTAACGCACTCGGAAGTTCGCGCATACAAGTGCCCCTTTTGCCCCAAAGCGTTCAAGACGTCGGTACAACTCGCGGGCCACAAGAATTCGCACACCAAGCCTTTCTCTTGCCAGCAGTGTAATCGGCCGTTCGCGTCGCTGTACGCGGTGCGCGTGCACATGGAGGTGCACACGCGGCAGAACAACCTGAAGTTCTCGTGCAGCGCGTGCGGCGCCAGCTACGCGCGCGCCTTCGCGCTGCGCGACCACCAGCGCACCGCGCACACCGACCGCCTGCCGCACACCCAATTCATAGACAACACGTTAAAAGTTAGCGAAGTGCCTGAAACAGAAGAAATCTCACTCGCGACGGACGAACTTAATAAGGAACTGCCAAATGATATCAATGAAATAGAAATGAAAACAGGAGAACTTATTATACCGTAA
- Protein Sequence
- MEDLTIQCPFCCTATFSSKESLVDHLSHIVERLVCPICKNSISSLDSLITHLKYDNCIETILLCQYTNGNSNKVEQTDVNLDFEENENVEQNENCIENNSEDISEVSKIYSELLSKHIDIKTQDIKLLKENGNRYLLVTNNDSALNGGATLVSKQNNDGTISFSIQESNVSEANDLVENEQMDAKTENQNQLDLENSDNIEEMYSCNTCGVSFTSVMDHIQNYHNDEDVVVEEPLEDGTTDSVAVEYESVPEEAVVEKQASRRMITDTGDIIEEPLRQNEQNGQVRVIIPINKDGDVKLENKQYIQVDKLGNSIVKENAPVVDTSNLKFHKVVMKTMEAPNGNKVKVYNCTTCNYLVSSLSEFRSHPCKNRVISEKYICPHCSVMYDNPKSLCAHMKVHKEKPATFACPVCPDVFDEPNSLCNHINEHKGNSDTSSLLEPIRFDCEVCSTKFPTSKSLKLHKRMHDPIKARPIEPPVETTEGSDKYLCLVCFKLIPVDYKVIHQNSHKVSSEMICDICNKKFPNKEYLEMHMNVHNMDKVTVGKQDNTLPYHCLYCNRKFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYECPHCPKRFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQQCNRPFASLYAVRVHMEVHTRQNNLKFSCSACGASYARAFALRDHQRTAHTDRLPHTQFIDNTLKVSEVPETEEISLATDELNKELPNDINEIEMKTGELIIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00357865;
- 90% Identity
- iTF_00357865;
- 80% Identity
- -