Basic Information

Insect: Colias croceus
Gene Symbol: -
Assembly: GCA_905220415.1
Location: HG991981.1:6782080-6784388[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.19 15 6.7 0.2 1 23 34 56 34 56 0.91

2 17 0.033 2.6 9.1 0.1 2 23 80 102 79 102 0.92

3 17 0.0021 0.17 12.8 2.6 3 23 126 146 125 146 0.98

4 17 0.0015 0.12 13.3 3.3 3 23 152 172 151 172 0.97

5 17 0.0093 0.73 10.8 1.7 2 23 178 200 177 200 0.93

6 17 1.2e-05 0.00094 19.9 1.0 1 23 206 229 206 229 0.97

7 17 0.035 2.8 9.0 1.4 1 23 235 258 235 258 0.96

8 17 0.00011 0.0084 16.9 0.3 1 23 264 286 264 286 0.95

9 17 0.00012 0.0096 16.7 1.9 2 23 396 417 395 417 0.97

10 17 0.012 0.97 10.4 4.9 1 23 439 461 439 461 0.97

11 17 0.0024 0.19 12.7 0.7 1 23 465 487 465 487 0.97

12 17 0.018 1.4 9.9 0.3 1 23 492 515 492 515 0.96

13 17 3.2e-05 0.0025 18.6 0.9 1 23 521 544 521 544 0.98

14 17 0.01 0.8 10.7 1.0 1 23 551 574 551 574 0.96

15 17 0.0052 0.41 11.6 1.3 1 23 580 602 580 602 0.94

16 17 6.6e-07 5.2e-05 23.9 1.0 1 23 608 630 608 630 0.99

17 17 1.3e-06 0.0001 22.9 2.6 1 23 636 658 636 659 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.19	15	6.7	0.2	1	23	34	56	34	56	0.91
2	17	0.033	2.6	9.1	0.1	2	23	80	102	79	102	0.92
3	17	0.0021	0.17	12.8	2.6	3	23	126	146	125	146	0.98
4	17	0.0015	0.12	13.3	3.3	3	23	152	172	151	172	0.97
5	17	0.0093	0.73	10.8	1.7	2	23	178	200	177	200	0.93
6	17	1.2e-05	0.00094	19.9	1.0	1	23	206	229	206	229	0.97
7	17	0.035	2.8	9.0	1.4	1	23	235	258	235	258	0.96
8	17	0.00011	0.0084	16.9	0.3	1	23	264	286	264	286	0.95
9	17	0.00012	0.0096	16.7	1.9	2	23	396	417	395	417	0.97
10	17	0.012	0.97	10.4	4.9	1	23	439	461	439	461	0.97
11	17	0.0024	0.19	12.7	0.7	1	23	465	487	465	487	0.97
12	17	0.018	1.4	9.9	0.3	1	23	492	515	492	515	0.96
13	17	3.2e-05	0.0025	18.6	0.9	1	23	521	544	521	544	0.98
14	17	0.01	0.8	10.7	1.0	1	23	551	574	551	574	0.96
15	17	0.0052	0.41	11.6	1.3	1	23	580	602	580	602	0.94
16	17	6.6e-07	5.2e-05	23.9	1.0	1	23	608	630	608	630	0.99
17	17	1.3e-06	0.0001	22.9	2.6	1	23	636	658	636	659	0.96

Sequence Information

Coding Sequence: ATGTGGAAACAGAGACGCAAGTTTAATGACCAAAGAGACAACGCGGCTATCGTTATAGAGTGTTCTAGCGCGTGTCCGTTTAGATGGAGGCGGGGTTGTTACACGTGCGCGTACTGCCCCAGTACATTTGCTGATTTCGAGACAATTGAAGAGCATTCCTCTCAACATCCGAATAGAATCGACGCCTTGAAATTTGCGCGCACTTTCGACTACATCAAAGTTGAGATAACGAACCTTAAATGCACCATATGCAATGAGAAAATGACTGATTTAGAAGCTTTAAAAGATCATCTCATAGCTGATCATGAGAAACCGATTATAAAAGATTTAGGGTTAGGTGTTACTCCATTCCTATTGAGGAATAAAGAGCTATTATGCGCGCATTGCGGGGAGAGATTCATGCAATTTACCAAACTCAATACGCATATGAATCAACATTATCCAAATAATATTTGCTGTCATTGCGGCAAGGCATTTTCAGCGGCCCACAGACTTAAAGCCCATCAAATTATTCACGAAACTGATAATAATAAGTGCACAAGATGCGACAAGGTTTTCGAGAGTAGACTTCAGAAAAATAGACATATTTACTTAACCCATACGTCTGAATTTAGGTACCGGTGCCCATATTGTAATGAGGCATTCAAAACCTATTCTGAAAGATTAAAACATTTAAGGAATGCTCATGGGAAGAAAGTCGAATATCCGTGTAATTTTTGCTCATCTGTATTCTCTATGTATAACCAACGCACGAGGCATATAAAACAAGTGCATATAAAGCATAGGCCGTTTCTATGTGAGCAGTGTCCGTATAAATTTGGTACTGCGGCTCAATTGAGGAATCACATGGTCAAACACGAGGGACAAACGGCTGAGGTTAAAGTAAAAGAGGAGGAAAGCGAAAACGTACCTGATTATACAGCGGTAGCATCTAATGACGAGGTCATTGAACGAAGGTTACAGGGTAACGCACGTCGGGCCATTTTCAGAAAGAATATACGCATGATAATGACCTCCTGTACCGCTTACCCTTTTAAGTACAGAAAGGGAACATACATGTGCTTCTTTTGTAAGAGCACGTTCTTGGAGCCAGAAAAAATGAGGGAGCACACGCAAAAATTGCACAGTGATGTCATTTTGAAGCCGAAAAAGTATGATCCGCTCAAAATGGACTTTGCTGTTACAGTGTGTAAATTTTGCGGCAAACACATTAGGGATTATAGTGAATTGAAGACGCATATACGGGAGCACGGGAATATTATAGACTGTTCGTATGGAGAGAGTATCTTGCCGTATAAACTGTGCAAAGATGAGTACTGTTGTCAGATTTGCGGCAAGCGGTACGAGATGTTCCTCAGCCTTCACAAGCATATGAACGATCATTATGAGCATTATATCTGTGAAACGTGCGGGAAGGGCTTCGCTACAACGCAACGAATGCTCAATCATTCCAAGACACATGAGAGGGGTGACTTTCCATGTAAACATTGTGGTGATACGCTATCTTCATACGCAGCGTTGTACGCGCACGTGTCGAGAGTCCATAAATCGAATAAGCGTTACAAGTGTCCTATATGCGACGAAAAATTCGCCTCCTACAAATATAGGATGCGACACTTGAATACAATTCACGGAGAAAAGACAGCGCTCTTCCCATGCCCGTCTTGTCCCAAAGTTTTCGACCTGTGCAGTCGTCGTACTGCGCATATAAAGTCCCAACACTTGCAGGAGCGTAATCACGCGTGTGGTTCCTGCGGTATGAAGTTTTTCACGAACTATGAGTTGCAAGAACACAGCATAAAGCATATTGGCGCTAGGATATATCAGTGTGATGTTTGTAAGAAGTCGTATGCGCGGTTGAAGACGTTGAGAGAGCACATGCGCATTCACAATAATGATAGGCGGTTCGTGTGCCCCGTTTGTGGACAGTCGTTTATTCAAAAATGTAGCTTAAAACAACATGTTAGGGTTCATCATCCTATGCAGGCCAAGGATGCGTTTTAA
Protein Sequence: MWKQRRKFNDQRDNAAIVIECSSACPFRWRRGCYTCAYCPSTFADFETIEEHSSQHPNRIDALKFARTFDYIKVEITNLKCTICNEKMTDLEALKDHLIADHEKPIIKDLGLGVTPFLLRNKELLCAHCGERFMQFTKLNTHMNQHYPNNICCHCGKAFSAAHRLKAHQIIHETDNNKCTRCDKVFESRLQKNRHIYLTHTSEFRYRCPYCNEAFKTYSERLKHLRNAHGKKVEYPCNFCSSVFSMYNQRTRHIKQVHIKHRPFLCEQCPYKFGTAAQLRNHMVKHEGQTAEVKVKEEESENVPDYTAVASNDEVIERRLQGNARRAIFRKNIRMIMTSCTAYPFKYRKGTYMCFFCKSTFLEPEKMREHTQKLHSDVILKPKKYDPLKMDFAVTVCKFCGKHIRDYSELKTHIREHGNIIDCSYGESILPYKLCKDEYCCQICGKRYEMFLSLHKHMNDHYEHYICETCGKGFATTQRMLNHSKTHERGDFPCKHCGDTLSSYAALYAHVSRVHKSNKRYKCPICDEKFASYKYRMRHLNTIHGEKTALFPCPSCPKVFDLCSRRTAHIKSQHLQERNHACGSCGMKFFTNYELQEHSIKHIGARIYQCDVCKKSYARLKTLREHMRIHNNDRRFVCPVCGQSFIQKCSLKQHVRVHHPMQAKDAF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -