Ccro022976.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Colias croceus
Gene Symbol
-
Assembly
GCA_905220415.1
Location
HG991988.1:521995-534658[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2.5e-05 0.0019 18.9 3.5 1 23 18 40 18 40 0.97
2 16 6.9e-06 0.00055 20.6 1.8 1 23 46 69 46 69 0.98
3 16 0.0023 0.18 12.7 4.7 1 23 75 97 75 97 0.96
4 16 8.5e-05 0.0067 17.2 0.8 1 23 103 125 103 125 0.98
5 16 0.0002 0.016 16.0 3.9 1 23 131 153 131 153 0.97
6 16 5.4e-05 0.0043 17.8 1.0 1 23 160 183 160 183 0.92
7 16 6.3e-05 0.005 17.6 0.2 2 23 192 214 191 214 0.96
8 16 4.3e-05 0.0034 18.1 0.2 2 23 221 242 220 242 0.98
9 16 4.8e-06 0.00038 21.2 1.4 1 23 248 272 248 272 0.97
10 16 2.1e-05 0.0016 19.1 4.6 1 23 278 300 278 300 0.98
11 16 8.5e-05 0.0067 17.2 0.4 2 23 308 330 307 330 0.95
12 16 0.67 53 4.9 0.4 1 23 336 359 336 359 0.95
13 16 0.0028 0.22 12.5 2.2 2 20 366 384 366 385 0.95
14 16 3.6 2.8e+02 2.7 3.4 1 19 550 568 550 572 0.89
15 16 1.3 1e+02 4.1 2.6 2 23 583 603 583 603 0.84
16 16 0.00069 0.054 14.4 2.3 1 23 730 752 730 752 0.98

Sequence Information

Coding Sequence
ATGGCAAAAGTAAATAAGAAGAAGAGGGCTAAAGATCCGAAGCCAAAGAGGTTCCCATGTACAGAATGTGGAAAGAAATTCACAGAAAAAGGCAGTCTGCACCATCACCTCCAATTACACTCTGACGATCGTCCCTTCACCTGTGAAATATGTAACGGCACGTTCAAAACCAATAAGTACCTTACAAAACATATAAAGAGGGTTCATAATGCTCCGACGGATCATGAGTGTGATTTCTGTGGCAAGAAATTCCATTATAAGAGCTTGATGGAGAAACACAGAGTTGTGCATACTGACGAAAAGCCGTACAAATGTAAATGGTGCAAGAAAGGTTTCAATTCTGGATATAGTCTATCTACACACATATTGATTCACACCAATTCCAAACCCTTCAAGTGTACATACTGTGAATACGCGTGTCGCGACAGTTCGACACTTCGGAAACACGAAGAGAGACATCGCGGTAAAGTGCCGGTGTTCAAGTGTAAAGTGTGCGATAAACAGTACACACGAAAGTCAGTGCTAAAAGTGCATGTAACAGAGGAACATTTAAATATGGACACCAAAAAGAAACCGTGTGAGATTTGCGGGAAAATGTTCAGGGATAATACATCGAGGAATGTTCATGTGCGTGTAGTCCACAAACAGAGCTATGCTGTGCAATGCGATGTTTGCGGTATATACATATCTAATAAATATAATCTAATGCAACATCTTCGCACGCACGTGGATTACCGGCCCTATAAATGTGACTTCGATGATTGTAAGAAGGCTTTTAAGGATAAGTCTACCCTCAAAAAACACGTTATCCTACATTATCCATCAAAACACTACGAGTGTCACATATGCGGACGACGATTTTCGCGATTATCCCGATTTAACAGACATAGTCGACAACATGAAGTCAAAGTGAAGAGTGTGGTCTGTGATTACTGTGGAGTGGGTTTCTACAACAAAAAATATTTAACAAATCACATAACGAAGAAGCACATGTTCAAACAGAAGTATATTTGCGATTTATGTAATTTCTTCACTTATAATAAGCCGAGTATAGTGATGCATATCAAATATGGACACGATTCGGAAGCGGACAGAGAATGTAAAATATGCCATAAAACCTATAAGAGACATATTTACTTGAAATCACATTATTGGAACGTGCATTGTATTAAATATAAACTAACAAGAAGACGTGTATTAAAGAAGAAAGTGGAAGTAAAAGAAGAGAACGAAGCAAATGATAAAGAAGTGCCTAAAATAAAAGAAGAAGTCGAAAGCAGTTCAGACGTTGAAATATCTAAATGTCTCGATTCGACTGGAAATATAGAAGTACAAGTTGAACGCAAAATGGACGATTTCTATGTGAGAGAAGTCGTTGTGAGAACACAGGCTCCAAAAAAACCAGATCCCACAATAGACGCGGCAGTGGAGAGAAATCTTCAGAAGAAGTTAAAAAGGATTTTGACAAAATCTCGAAGAGAGAAAGAGATAAAAGAGTTGGAGCGAGTGAGACGGATGTATAATAAGAGAATGCAGAAGTTGATTACTAAAGTTCCCAAACCATTAGCTGTACCAAAACCAACGAATGAAATAAAAATCGATAATATATACGAAAAGGATGAATCGGGAAAGGTGAAATTCAATGTACATCAGTGCTATGTGTGTTTTAAGCTATACGAAACGAAAGAAGCCCTCCTCGATCACTGCCAAGAACATTTTGATCTGTGCAACTCAACTATACTAAGAAAATGTCCGCTATGTGACTACGTGTGCAAGACAAATATGCGAAGACACCTTCTTGAAAAACACAAAATAAATACCAAACTATACACCGGCCACATAAAAGATAGAAAAAATAATAATAACGGCTCTAGATTCTATTTCGATATAAAAAGTAAAATTATCGATACAATGGATGTCATCCCTAGTGTGAAACACCTTAATAAACAGGCGTATGTCAATCTTGATAGAAAAAACCGCGAAATAAAAGACAAAATGATCGCTAAAACGAAGTTAGTTAAAAAAGGCAAGGAGTGGATAGTAGAAAAAGAAACGATAAATATCGATCAATATTTAATACCGAAAATTAGTGATGTGACTAGTGTTTTGAAAACCGGTAGCGACGATTATTGCGGGCGCATGAAAAGATTGAGTGACGTCACTAAGAAAAATGGCGGCAATATGATGTTCCCGTGTGATAAATGTGAGAAAATATGTCAGACTCTAAGCGCTTTAAAATTACATTACCGACGTCACGATCCAAATAAAAAACCTTTTAAACCTAAAATGTGGAAACATAAGCTTAAATTGATCGAAAATAAAAAAAGTAAAAATACCGTTACTAATACAGGTATCTATACCGCTACGGATAACGGTATTGCCACCACCGTTAATCCAAACCGTTATTTAGATCCTAAGCCCATAGTAAATAAACATAAATGCGATCCGGAGTTAAAAAAATTCTATGAAACAAACATAAAAGGTGGAGATATAGAATTTTGGCAGTTTTTGAAAATATACAACAAAATGACCAGAGAGAATATAGAGGATTTCTCAGATTTAGAAAAAAGAACCGATTTCGGCTTTCACATAGACAATAGACTTAATAAAACAGTTAATAAAAAAGTAAGGAAAAGAATTCGCGGGAACGTCAAAGTTAGGAAAATTTTGATTAGCAGAAAAGAGTATTTAAAAAGAAATGAAATTATAAAGCAAATGAGGCAAAGAATTGAGAGTTCAGTGCAATAA
Protein Sequence
MAKVNKKKRAKDPKPKRFPCTECGKKFTEKGSLHHHLQLHSDDRPFTCEICNGTFKTNKYLTKHIKRVHNAPTDHECDFCGKKFHYKSLMEKHRVVHTDEKPYKCKWCKKGFNSGYSLSTHILIHTNSKPFKCTYCEYACRDSSTLRKHEERHRGKVPVFKCKVCDKQYTRKSVLKVHVTEEHLNMDTKKKPCEICGKMFRDNTSRNVHVRVVHKQSYAVQCDVCGIYISNKYNLMQHLRTHVDYRPYKCDFDDCKKAFKDKSTLKKHVILHYPSKHYECHICGRRFSRLSRFNRHSRQHEVKVKSVVCDYCGVGFYNKKYLTNHITKKHMFKQKYICDLCNFFTYNKPSIVMHIKYGHDSEADRECKICHKTYKRHIYLKSHYWNVHCIKYKLTRRRVLKKKVEVKEENEANDKEVPKIKEEVESSSDVEISKCLDSTGNIEVQVERKMDDFYVREVVVRTQAPKKPDPTIDAAVERNLQKKLKRILTKSRREKEIKELERVRRMYNKRMQKLITKVPKPLAVPKPTNEIKIDNIYEKDESGKVKFNVHQCYVCFKLYETKEALLDHCQEHFDLCNSTILRKCPLCDYVCKTNMRRHLLEKHKINTKLYTGHIKDRKNNNNGSRFYFDIKSKIIDTMDVIPSVKHLNKQAYVNLDRKNREIKDKMIAKTKLVKKGKEWIVEKETINIDQYLIPKISDVTSVLKTGSDDYCGRMKRLSDVTKKNGGNMMFPCDKCEKICQTLSALKLHYRRHDPNKKPFKPKMWKHKLKLIENKKSKNTVTNTGIYTATDNGIATTVNPNRYLDPKPIVNKHKCDPELKKFYETNIKGGDIEFWQFLKIYNKMTRENIEDFSDLEKRTDFGFHIDNRLNKTVNKKVRKRIRGNVKVRKILISRKEYLKRNEIIKQMRQRIESSVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01562174;
90% Identity
-
80% Identity
-