Basic Information

Insect: Colias croceus
Gene Symbol: -
Assembly: GCA_905220415.1
Location: HG991977.1:2801304-2812025[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00023 0.018 15.9 6.5 1 23 197 219 197 219 0.98

2 13 1.7e-06 0.00013 22.6 0.3 2 23 232 253 232 253 0.97

3 13 3.9e-05 0.0031 18.3 2.1 2 23 262 283 262 283 0.98

4 13 0.00024 0.019 15.8 2.1 1 23 289 311 289 311 0.98

5 13 3.1e-05 0.0024 18.6 0.5 1 23 317 339 317 339 0.97

6 13 1.3e-05 0.001 19.8 7.3 2 23 346 367 345 367 0.97

7 13 3.6e-06 0.00028 21.5 0.7 1 23 373 395 373 395 0.98

8 13 8.3e-06 0.00066 20.4 1.3 1 23 401 423 401 423 0.98

9 13 0.00043 0.034 15.0 1.5 1 23 429 451 429 451 0.98

10 13 0.002 0.16 12.9 1.2 1 23 457 479 457 479 0.97

11 13 0.00025 0.02 15.8 0.3 3 23 487 507 485 507 0.97

12 13 3.3e-06 0.00026 21.7 1.3 1 23 513 535 513 535 0.99

13 13 0.00024 0.019 15.8 3.1 1 23 582 604 582 604 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00023	0.018	15.9	6.5	1	23	197	219	197	219	0.98
2	13	1.7e-06	0.00013	22.6	0.3	2	23	232	253	232	253	0.97
3	13	3.9e-05	0.0031	18.3	2.1	2	23	262	283	262	283	0.98
4	13	0.00024	0.019	15.8	2.1	1	23	289	311	289	311	0.98
5	13	3.1e-05	0.0024	18.6	0.5	1	23	317	339	317	339	0.97
6	13	1.3e-05	0.001	19.8	7.3	2	23	346	367	345	367	0.97
7	13	3.6e-06	0.00028	21.5	0.7	1	23	373	395	373	395	0.98
8	13	8.3e-06	0.00066	20.4	1.3	1	23	401	423	401	423	0.98
9	13	0.00043	0.034	15.0	1.5	1	23	429	451	429	451	0.98
10	13	0.002	0.16	12.9	1.2	1	23	457	479	457	479	0.97
11	13	0.00025	0.02	15.8	0.3	3	23	487	507	485	507	0.97
12	13	3.3e-06	0.00026	21.7	1.3	1	23	513	535	513	535	0.99
13	13	0.00024	0.019	15.8	3.1	1	23	582	604	582	604	0.99

Sequence Information

Coding Sequence: ATGGCTGCCGAGAAGAAAGTGCAGAAATATAATTTCGATAAAATATGTCGCGCTTGTTTACAAGTGAAAAAGGATATGAGACCATTATTTGAACAGCTGACTGCAACGATGCTGATGGGGATATCAAAAGTGCAGGTTGCCATTGGAGACGGTCTACCTCACCAGCTATGCTTGCAATGCGTGCACCAAATATCAAGATGCCATGCCTTCAAGGAGCTGGTGGAAAGAAATGATGGGATACTGCGCGAACAGAAGCTGAAGGATGATGAGGAGCTGCAGAAGAATGAGGCAGAGAAATCCCTAACAATATCCTGTTCAGAAACGGCGCCATACATCGAGTTTATTGAAGTCCAAAATCTGAATAGCAATCAGATACTAGAGGGCTTCTTTTCGGACACGTCGAGTCAAAACACTGTAGCTAACGTTACCCAAGAGATACTGCCGAAAGAAGACTTTGATATCGATAAGCTTCAACCACCGGCTCCAGTACCAACCGATACAAAAGAAGACAAAGGCTTCAATTCCGACGAAGAGAACTACCTCCAAATGGTGGTATTCCAAACCACGTGTGCGGTTGGTCCAGGGAGACATGTGTGCAACCTTTGTCACAAGGAGTTCAAACATGCGAGATGGTGGAAGCAGCATATGAGATCGCATACTAATTGGATTAAAGCGAATTGCAAGAAGCCGCCCAGTTGCCCGATTTGTGAGAGGACTTTTAAGGGCCCAGGCATGTTAAAGATGCACATGCGCACCCACGAGCAACGACCGCCCAAACAGCCCACGTGTTCCGTCTGCCAACGGACCTTCCCCACCAAAACACTCCTCTATCGACACAGACAGACACACTTCGAGCAGAAAACCCACCAGTGTACGGTGTGCGAGAAACGCTTCTTTAGTGGCTACGCTTTAAGGTCGCATATGGCCCGGCACAGGGGAGAGAGACCGTATATATGCGCCGTGTGCTCGAAGACGTTCTATAATCCGACGGATTTGAAGGTACATTTCCGTCTGCACACTGGTGAGAAACCATTAAAATGCTCAGAATGTAACAAAGCCTTCCGAAGACATTCAACACTGTGCCAACATATGAAGAAGCACAAAGGTATACGGAACCACGTGTGCAATATTTGCAATAAGGCTTTCTATGAAGTGTCGAAGCTGAACGCTCACATGCGGGTGCATACAGGCGAACGTCCCTTCGAATGTCAGTTCTGCGAGCGTCGTTTCGCTCAACAATCAGCGCTCATCTACCACAGACGCACGCATACAGGCGAGAAGCCGTACAATTGCAAGCTGTGCTCTGCCAAGTTTACAACTTCCTCGGCAAGGAATAACCACCTAATGACGCATACGGGGTTGAAGAAATTCGTGTGCCCAGTATGTCTCAAAGGCTGCTCTTCCCGTACGGAACTACGGGTACACTCAAGCAAGCACACGGGCGAGAAGCTGTTCGGCTGCGGGATCTGTTCGCAGCGGTTCAGCTCAGCGTCCTACCTCGCTGTGCACAAGCGGTACCATACCGCTGAGAAGAAGTACCAGTGCAATGTTTGCGGGAAAGCATACATGGAGTCCAGTTCCTACAAAAAACACTTAAAAACGCACGAAACGGTGAAACAAGACGCGGAGAGTTCCACAGACAGTACACCCGTAGAGAAAAAAGAGGAGGATGAAGAAGAACAAAAACCACAAGAAACGGAACAGACTCAAGAAGTCACGGTGACTGAGAATGGCCAGAAGCGATATAAGTGTGGGTTGTGTGTGAAGAGCTATATGTATCTGCACAGCTTGAGGAAACACATGCTAACTCATGTGCAAATGTGCGTGTTCAACCCGGACGGCTCGGAGAAACTGTATGCTTTTAGGAACGTCCAACAACAATATCCTGTGATATCTTCAGTACAATCTTTACAATTACAACAAACACATCAACATATTAACTCTCAGCCCCAACAACTTCAAGTACAAACAATACAAATACATCCGCAGCAACAGCCTATACAAATCCATGCTGTTGGTGTACAACAGGTGCAACAAGAACAATTACATGTTGCTACTTCTACTTGCCAGACCATGTTGCCCAATATCTTACAGCTCCAGCCAGCAACAGTAGTATCAGGTTTGGGTCAACAAGACCTGTCTAGCGTGGCTCATAGAATTATACTGCAACAACCTACAGGAACACATCCAGCCGTTTATACCATACATCACTAA
Protein Sequence: MAAEKKVQKYNFDKICRACLQVKKDMRPLFEQLTATMLMGISKVQVAIGDGLPHQLCLQCVHQISRCHAFKELVERNDGILREQKLKDDEELQKNEAEKSLTISCSETAPYIEFIEVQNLNSNQILEGFFSDTSSQNTVANVTQEILPKEDFDIDKLQPPAPVPTDTKEDKGFNSDEENYLQMVVFQTTCAVGPGRHVCNLCHKEFKHARWWKQHMRSHTNWIKANCKKPPSCPICERTFKGPGMLKMHMRTHEQRPPKQPTCSVCQRTFPTKTLLYRHRQTHFEQKTHQCTVCEKRFFSGYALRSHMARHRGERPYICAVCSKTFYNPTDLKVHFRLHTGEKPLKCSECNKAFRRHSTLCQHMKKHKGIRNHVCNICNKAFYEVSKLNAHMRVHTGERPFECQFCERRFAQQSALIYHRRTHTGEKPYNCKLCSAKFTTSSARNNHLMTHTGLKKFVCPVCLKGCSSRTELRVHSSKHTGEKLFGCGICSQRFSSASYLAVHKRYHTAEKKYQCNVCGKAYMESSSYKKHLKTHETVKQDAESSTDSTPVEKKEEDEEEQKPQETEQTQEVTVTENGQKRYKCGLCVKSYMYLHSLRKHMLTHVQMCVFNPDGSEKLYAFRNVQQQYPVISSVQSLQLQQTHQHINSQPQQLQVQTIQIHPQQQPIQIHAVGVQQVQQEQLHVATSTCQTMLPNILQLQPATVVSGLGQQDLSSVAHRIILQQPTGTHPAVYTIHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00115128;
90% Identity: iTF_01193759;
80% Identity: -