Ccro021332.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- -
- Assembly
- GCA_905220415.1
- Location
- HG991976.1:457528-459273[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.033 2.6 9.1 3.7 1 23 84 106 84 106 0.93 2 13 1.5e-05 0.0012 19.5 2.4 2 23 113 135 112 135 0.94 3 13 2e-07 1.6e-05 25.5 0.3 1 23 141 163 141 163 0.98 4 13 2.8e-07 2.2e-05 25.0 2.3 1 23 169 191 169 191 0.99 5 13 0.0005 0.039 14.8 1.9 1 23 197 219 197 219 0.97 6 13 5.7e-06 0.00045 20.9 2.4 1 23 225 247 225 247 0.97 7 13 3.2e-06 0.00025 21.7 2.1 1 23 253 276 253 276 0.97 8 13 0.27 22 6.2 0.2 3 23 319 338 317 338 0.94 9 13 1.1e-05 0.00084 20.1 0.2 1 23 344 367 344 367 0.94 10 13 3.4e-06 0.00027 21.6 5.6 1 23 373 395 373 395 0.98 11 13 2.8e-05 0.0022 18.8 0.3 1 23 401 423 401 423 0.98 12 13 0.0023 0.18 12.7 0.6 1 23 429 451 429 451 0.97 13 13 0.00019 0.015 16.1 3.1 5 23 460 478 457 478 0.96
Sequence Information
- Coding Sequence
- ATGAGTGCGGCGTATGACAGATTTTACAACGCTCTAGTCAATTTTCGAAATCATTTCGTAGAAGAGCACAAAAAAGAATGTAACTATCCAGATTTCACCGAGTCGAGCTCAGAAGAAGAGACGGCGAACGGTTTTGACGTGGATTCGTATGACGATTTAACGCTGTGCAACATGCGAAGGGATAGGATGGACGAAGAGACGAGATTGGAACTGAATGAAGTGCAAACGAAAGTGAACGGAAAAGTGTTTTACACGTGTAAAATATGTGGGAAAAATCTGAGCTCATCTCACACGTATCTGTTTCACAAGAAGATTCACACCGGGGAGCGGCCCTGCGTGTGTCACGTGTGCGGTAAGACCTTCCGAGCGCCGAACGGTCTACAGAGACACTTGAAAGAGACGCACGAGAAAGTTAAAAGTTACGTGTGCGCGATTTGCGCCAAAACGTTTGTGAACTCGCAGAACTTACGGCAGCATATGAGGATACACACCGGCGAGCGGCCTTATGTTTGTTCGCAATGTGGGAAACGTTTCACGCAGAGCGGTTCGCTGCACGTCCATCTGAAGACTCACACCGATCTGTTTCCATTTAATTGCACTGAATGCGGAGCCCATTTCAGGTTACGGGCCGGGCTCACGAAGCACAAGCTGAAGCACACGGGCGAGCGGCCGCACGTGTGTGCAAACTGCGGGAAAGGTTTCCGGCAGAAACACGAGTTAAATAGTCACGTGCTGACGCACAGCAACGCTAAGCCCTTCTCGTGCTCGGTGTGCGGCGCCACGTTTCGACAGCGACGTGCTCTGAGACATCATATCAAACGCTTGCACGAAACTAGGGACGTATCCTGTCACGAGTTTAAAAAGGAAGTCCGTCCAGTAAATGGTGCGACGGAAAACAAGAATGGCACCACTAGATTATACACGCTAACAAAAAGTGGAAAGAAATACACGATTTGCGAAATTTGCAATAAGGAAGTAATGATTTCCTCCTGGAAAAGGCACGAGAGATCGCACCTTGAAGAAAAGAGTTACAGCTGCGACACATGCGGGCTGGGCTTTAAAGACAGCGGTAACTTGGCGCGCCACAAACAAGCCCTACACAATAACCACAGACCGCACTCCTGCACGATTTGCTCCAAGAAATTCTCCAGAAATGGCCACCTTCAGGAGCACTTAAAAACCCATTCCGATAGCAGGAACTACGTATGTGATCTGTGTGGCAAAGCATCCAAATCCAGCAATGCTTTGAGGATGCATAGAAAAATCCATGTGGACGTGCATGCATTCCAATGTTTATTTTGCTGGGCCAAATTTAAACGAAAATCTGAAGTCTACGCTCACGTTACAGTGCACACGGGGGAAAAGTCCCACGCTTGCAAGTGTGGCAAGACGTTTAGACTTCGAAGCCAACTCAATAACCACGCCCGTACACACAAAACCGAGGAAAGTTAA
- Protein Sequence
- MSAAYDRFYNALVNFRNHFVEEHKKECNYPDFTESSSEEETANGFDVDSYDDLTLCNMRRDRMDEETRLELNEVQTKVNGKVFYTCKICGKNLSSSHTYLFHKKIHTGERPCVCHVCGKTFRAPNGLQRHLKETHEKVKSYVCAICAKTFVNSQNLRQHMRIHTGERPYVCSQCGKRFTQSGSLHVHLKTHTDLFPFNCTECGAHFRLRAGLTKHKLKHTGERPHVCANCGKGFRQKHELNSHVLTHSNAKPFSCSVCGATFRQRRALRHHIKRLHETRDVSCHEFKKEVRPVNGATENKNGTTRLYTLTKSGKKYTICEICNKEVMISSWKRHERSHLEEKSYSCDTCGLGFKDSGNLARHKQALHNNHRPHSCTICSKKFSRNGHLQEHLKTHSDSRNYVCDLCGKASKSSNALRMHRKIHVDVHAFQCLFCWAKFKRKSEVYAHVTVHTGEKSHACKCGKTFRLRSQLNNHARTHKTEES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -