Ccro021530.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- -
- Assembly
- GCA_905220415.1
- Location
- HG991981.1:4145956-4153809[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.017 1.3 10.0 4.1 1 23 90 113 90 113 0.91 2 20 0.054 4.3 8.4 0.0 2 23 140 162 139 162 0.91 3 20 0.0018 0.14 13.0 0.7 2 23 186 207 185 207 0.97 4 20 2.5e-05 0.002 18.9 0.4 1 23 211 233 211 233 0.98 5 20 2.3e-05 0.0018 19.0 3.3 1 23 238 261 238 261 0.98 6 20 0.062 4.9 8.2 1.2 2 23 269 291 268 291 0.95 7 20 1.6e-05 0.0013 19.5 1.7 2 23 298 320 297 320 0.96 8 20 2.1e-06 0.00017 22.3 3.3 1 23 326 348 326 348 0.96 9 20 7.9e-05 0.0062 17.3 0.4 1 23 354 376 354 376 0.99 10 20 0.15 12 7.0 0.8 1 13 382 394 382 396 0.92 11 20 0.00039 0.031 15.1 0.1 1 22 460 481 460 483 0.89 12 20 6.3 5e+02 1.9 0.0 2 23 510 532 509 532 0.83 13 20 0.23 18 6.4 1.1 2 23 555 576 554 576 0.96 14 20 0.00073 0.058 14.3 0.1 1 23 580 602 580 602 0.98 15 20 0.00062 0.049 14.5 0.7 1 23 607 630 607 630 0.98 16 20 0.17 13 6.8 0.2 1 21 636 656 636 659 0.89 17 20 0.0014 0.11 13.4 1.3 2 23 665 687 664 687 0.95 18 20 0.00074 0.059 14.3 1.4 1 23 693 715 693 715 0.96 19 20 1.3e-05 0.001 19.8 0.5 1 23 721 743 721 743 0.99 20 20 7.9e-05 0.0063 17.3 1.9 1 23 749 772 749 772 0.97
Sequence Information
- Coding Sequence
- ATGTGCACCTCACACCTTCATTTCCTGGTCTGCACATGTGGCTGCCAGTCTCTTGGTATCTTCTCCATGCATAGTGCATCGCTGAACGAGGTACGTGAACAACGGGAGGGTAACGTTAATGGGAAAGCATTATCCGGAAAAGTACAAAAGCACCTCTCTGTATCCAGTCAGAATACTTCAAACGAATTAAGAAAACATTTAAATAACATTGGTGAGATTTTACGGTGGTCCAATGCGACACCGATTAGATGTTACGCCGGGAAGGGGTATTCCTGTTGTTATTGCTCAGAACAATACATACACCCGTCCGATTTGAAGACGCACACCACAGACACGCACGAGGGCATCAAAAACGCATGCTTCACTAAGAAATCTGATAAAAGCGCTTACCATATCAAGCTAGATATCACGTCGTTGCAATGTAATATATGTAAAAGACGTATCGACGATTTAGACGCTCTCATAGAACATCTTGTTAACGAGCACCAAAAGATAATCTATACAGACATCAAAAACCAGATAGTGCCCTTTAAATTCGATAACGATAACGAGTTGAAATGCTTCATCTGTTTGAACACGTTTTCTACGTTCAAAATGCTCTTAGCGCACATGAATGTACATATCAGGAATTTTGTTTGTGAGATCTGCGATGTGGGATTCGTGTACAGCAAACAGTTGAAACTTCACTATCGGTCGCATTTGACCGGCACGTTCAAATGCGACCACTGCGAGAAAGTGTTCTCCACGATGGAAAACCGCAAATCGCACATGAAGTCCGTTCATGGTAATAACAAGTTTTTGAATAAGTGCGGGTTCTGCGAGGAGATGTTCAAAGAGTACCGCCAGAAGCAAAGGCACATTAACCAGGTGCACGGTGTTGTCTTGGCGCTCAAGTGTACGGCGTGCGATCGCAGCTTCACCACGCAAAGGCAGTATAACGTTCACATGAAACGCGACCATCTACTGGAGAGGCGGCATCCATGTAAACAGTGCGATAAGACGTTTTATACGTCCAGTCAGTTGAAAGACCATATGGTGAAACACTTGGGACTCCGGGAATACAAGTGCGATGTTTGTCTGAAGTCGTACGGCCGCAAGTGGACCTTGCTCGAACATTTGAGGATTCACGCAGACGATAGACGGTATAAGTGTGACGTGTGCGGTCTCGCGTTTGTACAAAAGTGTGGTCGGAGTGAAGCCAATCGGAAAAGGAAAACTGCTAAGGATGTACCTCAAAATCTTGATAGTAAAGAAGCAACGGGCAGGATTAGAGGTCTTACTGTTGGGAAAGAAGCAATATATAAACATTTTGCGAATATACGAGAAATACTCAAGTGCTCGAACGCAACCATGTTTCGAGCTTACCGTCGTATTGGCTTCGCATGCGCTTATTGCGACAAAGAATACCCCGATCCCGCTGATCTGAAAAAACATAGCCTAGACTCGCACGAAGGAATTGAAGATGCATTTTTCTCTGGAATACGAGACTTAAGTAGGTTTACTCTAAAATTGGATGTAACAGACTTGCGTTGTAACATTTGCAATAGCGACATTGATACTTTGGCTCTCTTGGTCGACCACCTGGTAAACGAACACGGAAAAACGTTGCACACCGATATCAAGAATCAAATTGTGCCGTTCAAGTTTAACAGCGGCGTGCTGTCGTGCTATATATGTCTGAACAGATTCAATCGATTCAAACCGCTGTTCGAACACATGTCATCCCACGTGCGCAACTATGTATGCGACAATTGTGACGCTGCGTTCATAACGCGACGGCGTCTTGCCGCCCACGCGAGGAACCACAAGCTAGGTGTGTTCGAATGCAACCTGTGCCAAAAGGTATTCGATACGCTAGTGAAGAAACAGTCGCACGTCAGAACGGTACATACGAAGAAAATCGTGTACAGATGTGGCAGTTGCAATTTGGTCTTCGTATCGTACAGAGCGAAAGAGCGGCATGTCGTCGAAGAGCACGGGCACGCGACGCTCAAGTGTGAGCCGTGTGACAAGACCTTTATGCACCAGAGAGCGTACTGGGTTCACATGAAGAGGGACCACTTGATGGAGAGGAAGTATAGCTGCGAGGCGTGCGGTAAAAAGTTCTTCACGAGCAGAACGCTAAAGGACCATAGCGTGACGCACACGAGGTTAAAGAATTACCAGTGTGATGTGTGCTTGAAGTCGTATGGGAGGCAGGATACGTTGAGATTGCATTTACGGATACACGCGGATGATAGAAGGTTCAAATGTCAGTATTGTGAACAGGCGTTCGTGCAGAAGAGCACGTGGAAGAGCCATGTGAAGAGCAAACATGGGGAGGTGGTTTAA
- Protein Sequence
- MCTSHLHFLVCTCGCQSLGIFSMHSASLNEVREQREGNVNGKALSGKVQKHLSVSSQNTSNELRKHLNNIGEILRWSNATPIRCYAGKGYSCCYCSEQYIHPSDLKTHTTDTHEGIKNACFTKKSDKSAYHIKLDITSLQCNICKRRIDDLDALIEHLVNEHQKIIYTDIKNQIVPFKFDNDNELKCFICLNTFSTFKMLLAHMNVHIRNFVCEICDVGFVYSKQLKLHYRSHLTGTFKCDHCEKVFSTMENRKSHMKSVHGNNKFLNKCGFCEEMFKEYRQKQRHINQVHGVVLALKCTACDRSFTTQRQYNVHMKRDHLLERRHPCKQCDKTFYTSSQLKDHMVKHLGLREYKCDVCLKSYGRKWTLLEHLRIHADDRRYKCDVCGLAFVQKCGRSEANRKRKTAKDVPQNLDSKEATGRIRGLTVGKEAIYKHFANIREILKCSNATMFRAYRRIGFACAYCDKEYPDPADLKKHSLDSHEGIEDAFFSGIRDLSRFTLKLDVTDLRCNICNSDIDTLALLVDHLVNEHGKTLHTDIKNQIVPFKFNSGVLSCYICLNRFNRFKPLFEHMSSHVRNYVCDNCDAAFITRRRLAAHARNHKLGVFECNLCQKVFDTLVKKQSHVRTVHTKKIVYRCGSCNLVFVSYRAKERHVVEEHGHATLKCEPCDKTFMHQRAYWVHMKRDHLMERKYSCEACGKKFFTSRTLKDHSVTHTRLKNYQCDVCLKSYGRQDTLRLHLRIHADDRRFKCQYCEQAFVQKSTWKSHVKSKHGEVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -