Ccro001438.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- -
- Assembly
- GCA_905220415.1
- Location
- HG991962.1:4345983-4355495[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0034 0.27 12.2 1.0 3 23 209 230 208 230 0.96 2 23 0.032 2.5 9.1 0.6 1 22 604 625 604 625 0.95 3 23 4.7 3.7e+02 2.3 0.3 1 22 667 688 667 690 0.82 4 23 0.077 6.1 7.9 1.3 3 21 701 719 699 720 0.94 5 23 0.093 7.4 7.7 0.1 3 23 729 750 727 750 0.89 6 23 0.014 1.1 10.3 0.1 3 23 770 791 769 791 0.96 7 23 0.1 8.1 7.5 2.9 1 23 797 820 797 820 0.95 8 23 0.087 6.9 7.7 0.0 1 23 846 869 846 869 0.90 9 23 0.027 2.1 9.4 3.3 1 23 874 896 874 896 0.96 10 23 0.0064 0.5 11.3 0.2 1 23 902 925 902 925 0.95 11 23 8.4e-05 0.0067 17.2 1.5 1 23 937 959 937 959 0.97 12 23 0.00012 0.0098 16.7 1.8 1 23 1008 1031 1008 1031 0.97 13 23 0.002 0.16 12.9 1.7 1 23 1092 1115 1092 1115 0.96 14 23 0.00071 0.056 14.3 2.1 2 23 1135 1157 1134 1157 0.95 15 23 0.023 1.8 9.5 0.1 2 23 1163 1185 1162 1185 0.95 16 23 0.0069 0.54 11.2 0.2 1 21 1229 1249 1229 1250 0.95 17 23 0.00086 0.068 14.1 0.6 1 23 1260 1282 1260 1282 0.93 18 23 0.00015 0.011 16.5 0.3 2 23 1373 1395 1373 1395 0.93 19 23 1.2e-07 9.8e-06 26.1 1.1 3 23 1402 1422 1401 1422 0.98 20 23 0.0015 0.12 13.3 0.1 2 23 1441 1463 1441 1463 0.96 21 23 0.084 6.6 7.8 0.0 1 23 1485 1507 1485 1507 0.97 22 23 0.0083 0.66 11.0 0.4 1 23 1513 1536 1513 1536 0.95 23 23 0.00018 0.014 16.2 0.4 1 23 1544 1567 1544 1567 0.96
Sequence Information
- Coding Sequence
- ATGAATGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATATTCCCTACCACCAGTTCGGATGACTCGGAACCTCCTGTCCTTGTGTCGAAAATAAAGGATTGCGTGTCCGTTCAGATAAACGAAAATGACGAACTGCCCACTAATGTCTGCAGGAAATGCTTGGATAATGTCAATAACTGGCATATATTCAAGACAGTTTGTGAAAGGACACAAAACAAACTACAATCTCTGATTCATAAAGAGAGCAGCCATCTAGAAGAGGTTCACATTAAAACTGAACCAAATGAAGGATTATCAGATGGTGGTTATGATGATGGGATTGCTATTGATGGAACATATCCAGATATTGAGAATGCCGGGCCCTCTAATAAAATCCAACCTGAAGGACCTCCAATATTGGCATCTTTGGGACTCACTCCAAGAAGTGATAAGGGTGTGGAAAGCGAAAAAGATGAAGAGGAAGAAGATGAAGAGATGAATGAACAACAAAACTTTCCGACCCCGCCCAATGTACCAGAAGTTTCTATTACGGTAATGCGCCCTACAGGAGAAACGTTACACGCACGGCAGGGCATACAGCAACTAGCTTCAAAGGATTGCCTAGTCTGTGGCCGATCCTACAGGTACTCACATAATGCCCGACGTCACGAACTCACGGCGCATAGCTTCGATAGATATACAAATAAAATTACAAACAAAAAATCTAATCGTATGCAACCAAAACTGAGGCCTAATCCATTCAATCCTAAGGCCCGTTTAATGCCAAATCCTATAAGCCATAAAATGCAACTCATTCCAAATACTCCGATGGCCATTAAGATGATGCCACAAAAAACTATCATACCACCAAAACCCATTCCTATTAAGAATATCAAACAACAACAAAACAATCTGCCATATCCTTTACGTATTAAAGCATTAAAAGATTTGCAAATCAAAAAGAAAGAACCACAAATATTGAAGACGCTACTTACAACGAAGCCTGAGGTGTTAGTATCTGAACCTGAAATTCTCAACTCAGGTCCGGAGAGCCCTGAGACATTAATATCAGAACCTGAAATAGCTTCTTTTCAAGTAGAGACTATTCTATCAGAGCCCGATGGCTTCATAAATCATCAAGATGAGGGAGAAAATGATGAGGAAATGCGAAATCAAAGCCAGAATTATGACACTGTTGACATGGACTCTGATAATGAGATCGAAATCGCTCGTCAACATGAAAATCAACCTGAAGGTGACCAAATTGATAATCAGAATGAAATGGAAACAGAGCAGACTATAAATAACGAGGAAAATGAAAATGAGGAACAGAACGATACTGAAATTGAACCTAAAGAAGGTGAAGGCCAAGAAGATGTTAATGATGAAAATAACGAAAATGAAAAGGAAGTAACAGAGAATGAAGAAGGTAATGAGGAAAAAGAAGCAAATCAAGATGAAGAAAACCAAGATGATGCTTTCGATCCCGATTTACCGCCCCTAGCCCCAGTTGTGGAGATAAATGAAGATATGCAAACAAACTCTTATAACAGCGAGATTAATGAAGAAGAAGAATTAGAACTTGACGATTCAGCCGACCCTAATGACGTAGTCGATGGCGATGATAAGGAACTCGATCCAGATAAACAGTACGTCACCAAAACGCAAAAGGAATTCATCCAAAAATATCGCGACATCATCGAACAGATCAACACTAAAAGATGTCTTTGCTGCAATAAAGAACACCCGAGAAGAAAAGCAGTTATACAACATTTGCAGAAAAATGGACACAAAGTACCTAAACATACTTGTTACAATTGTGTCGTAACCTTCACTCACATAGGTGCTCTGCTAAGTCACATGAGATCAAATACTTGCACTGATCTATGGAAAATAATTTATAATGAAAATGGTATCAGTGATGATCAAGTTCTTGAAAATGAACCAAAAGATGTCAAAGTACATTACAAAGATATATTTAACGCTAGGTCCTATGCTTGCAAGTTGTGTCCTGCAAAATTCCAATTGAAACAATTTATTATGAAACATGTGTTAGATGTTCATGAGGACGGCCAATCACAGGTTCATCTTGCTTGTGTGCATTGTAGGTCGCGATTCAAAGATAAGAACATGTGGAAGAAACATATTCGTAATGGTGAATGTACTGTTTACATCGCCTGTGATTTATGTTCAGAGACGTTCCGCAATATGCAAGATTTCAATGAACATGCTCTGGCAATTCATGCTGGTAGTTTTGATCCTGATAATCAGAACAAATGTGTGGACGGTCGTCCGTCTGATTGCCCCATTTGTGGTAAAAAGAACAGTGGCTATGCAAATTTAGTTAAGCATTTGAAGATAATACACAATGAAGAGAAACCGCATTACTGTCAACATTGTGATTCAAAATATGAGCTAGCCACCGATCTAAACAAGCACATCTACATGGAGCATTCTGATAAGGTTTTAGGAGTGCAGTCCTCGGAGCCAGACATGTCGCTTGTAAAAGAAGAGACAGAAGAATACCATTATTCATGTACAGAATGTAATGCCATATTCGAAACTGTCGATGCATGGACTGATCATCAGGTTGCAGAACATAATCAAATCGCGCATCATTGCGACCAATGTGAAAAGAAATTCCTAAGACCATCTGAGCTGGCAGAGCATAAAAATAGTCACTTGCGCGTCAAGTTGTACCCGTGTAGTATTTGTTCCAATTCTTACAGTACGCCACAAAAGTTAGCGGAGCACGTTCAGCAGACTCACCCAGGAATGGGAATGGGCGCCGGAGAAACAGAATTCTTCTGCGATATTTGTGTGAGATCATTCAAAAGTCGTCAGGCCTTCTCGAACCATATGCGTATTCATGCTAAAGTGCCCTCTACTAAGAGAAAGTCTGGAGAGCCTAAAAGTTTTGCTCCACAAATTATTGGTAAACCAATTCGTCATTTCTCTATGGTACAACCTGGATTTAGTCCATTTAAACCCAATTGTAATGTACCAAACGCACCTTATTCGTGTGATATTTGTGGAAAAGGATTTATGCACAAGAAAAACATCTGGAAGCACAAGAAAGTTCTGCATGCAGATATTTTGAATGAAAGAAATGACAGTGAGGAGAACACTATGCATGCATCCACAGAAGATGACGAATACAATCCCGATGAAAATGGAGCGATTTTATCTACGCCACAGTTCAACAGCTTCAATTTTGCGAATCTTGCAACTAGCATGCAGCCAGCGCCTTCCCAGGATGCAATGCCATATTCCTGTGACCTGTGCTATAAGCGATTCCCTCTAAAAACAAGCCTGTGGAAACATAAACGTGCTAAGCATGGAATTATTAACGCGAGCGCCACAGACAATTCGGTAGAAGTTAACAATAGTAGATCCAGTTGTACCATATGTAAAATTTCGTTCACCGACAAAAAATCATACTACAGGCACAGGAAAAATGTCCACAAGTCGACTGTTCAAATGTGTAAAATATGTGGCAAGCCATTGAATTCTACTCTAGAGCTCTATGAACATTTAAAGTCTGCTCATGCACGGGAATTGTTAGGCTACAACGCTAGCCAAGGTCCTAGTAAAGCTCAAGATATTAGTCAAGAAATGGAACTCGAATACGAGCCAGAGCCGGAACCCGTGGACCCGAGTGCGGACTACCAAGCTCGATACCCGTGCGACACGTGCGGGAAACAATTCGTTGGCTTGCTCGCCTTACAAAACCATCAATGTATCAATCAAGTTACACAACAACCTCAGACTTTCGATTGTGAAATTTGCCACAAGAGTTACACCTCCATCGCTGCACTCAAGAGTCACCGTGGATGGCACTTGCGCTCGCCCGACGGCAAGGCCGCCGCGAACAACAGCGGCTTGTGGATGCCGCAAAACAAAGTAACGAGTAAAGTCAGTAAATATGAAGTCGTCGACCCGTCTCAGTTAGCCCGCGTGTCGCACACGACTACCAGTCCGGCCTCCATTGCCAAGCGAAGGCTACCGCCAGAAGTGGAGGTGACCGTCGTCAATCCGAACAAAAAAATGCGATCGGATGATTCTATCGAAATGGACCAGCAGATTTCATCCAGCGGAGCGGACGACAGATACTGTAATATATGCGATCGCGAATTTACGAAACGAGCAGCCTATCAGCGCCACATGGACGAGGTGCATCAACCGAACTCGGTGTTTTGTCCCGTCTGCGACAAGAGTTTCACGCGAAAGTCCACTTTAATTGTGCATATGAAGAAGCACTATGACACCGGGGAAGGTAGTTCGAGTATGACTCTTCAAGAGGACGATAATAATTCGTGCGAAGTGTGCGGGGAGCAATTCGAGAGCGCTAAAGCGTTGAACATGCACCGCGAGACGCAACACGGTGATGAGGAATCTAACGAATCTGAAGATGACGGTTCGGTGCCGCTCCCGCAGCCCGGAGAGTTCACGTGCGGACAGTGCGGGGACGGGGTCGCCACTCCTCGCGATCTGATCGCGCACAGAACTATGCACTCGACGCCCACTAAATTCTTCTGCAATATTTGCAAGGTATACTTTGCAAGAGCGATCGACCTGTCTTCGCACACGCGAGCCAGGCATTCTGATAATGAAAAAGTTTTCTTCCCTTGTGCTATGTGCGACCGTTTCTATATGAATAAGAAGAGCTTACAACGGCACATCGAAATGGCTCACTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLVSKIKDCVSVQINENDELPTNVCRKCLDNVNNWHIFKTVCERTQNKLQSLIHKESSHLEEVHIKTEPNEGLSDGGYDDGIAIDGTYPDIENAGPSNKIQPEGPPILASLGLTPRSDKGVESEKDEEEEDEEMNEQQNFPTPPNVPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKITNKKSNRMQPKLRPNPFNPKARLMPNPISHKMQLIPNTPMAIKMMPQKTIIPPKPIPIKNIKQQQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEILNSGPESPETLISEPEIASFQVETILSEPDGFINHQDEGENDEEMRNQSQNYDTVDMDSDNEIEIARQHENQPEGDQIDNQNEMETEQTINNEENENEEQNDTEIEPKEGEGQEDVNDENNENEKEVTENEEGNEEKEANQDEENQDDAFDPDLPPLAPVVEINEDMQTNSYNSEINEEEELELDDSADPNDVVDGDDKELDPDKQYVTKTQKEFIQKYRDIIEQINTKRCLCCNKEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFTHIGALLSHMRSNTCTDLWKIIYNENGISDDQVLENEPKDVKVHYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSQVHLACVHCRSRFKDKNMWKKHIRNGECTVYIACDLCSETFRNMQDFNEHALAIHAGSFDPDNQNKCVDGRPSDCPICGKKNSGYANLVKHLKIIHNEEKPHYCQHCDSKYELATDLNKHIYMEHSDKVLGVQSSEPDMSLVKEETEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCEKKFLRPSELAEHKNSHLRVKLYPCSICSNSYSTPQKLAEHVQQTHPGMGMGAGETEFFCDICVRSFKSRQAFSNHMRIHAKVPSTKRKSGEPKSFAPQIIGKPIRHFSMVQPGFSPFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADILNERNDSEENTMHASTEDDEYNPDENGAILSTPQFNSFNFANLATSMQPAPSQDAMPYSCDLCYKRFPLKTSLWKHKRAKHGIINASATDNSVEVNNSRSSCTICKISFTDKKSYYRHRKNVHKSTVQMCKICGKPLNSTLELYEHLKSAHARELLGYNASQGPSKAQDISQEMELEYEPEPEPVDPSADYQARYPCDTCGKQFVGLLALQNHQCINQVTQQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTSKVSKYEVVDPSQLARVSHTTTSPASIAKRRLPPEVEVTVVNPNKKMRSDDSIEMDQQISSSGADDRYCNICDREFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYDTGEGSSSMTLQEDDNNSCEVCGEQFESAKALNMHRETQHGDEESNESEDDGSVPLPQPGEFTCGQCGDGVATPRDLIAHRTMHSTPTKFFCNICKVYFARAIDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01562167;
- 90% Identity
- iTF_01562167;
- 80% Identity
- -