Basic Information

Insect: Colias croceus
Gene Symbol: -
Assembly: GCA_905220415.1
Location: HG991968.1:2321921-2333065[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.0085 8.8 6.8 0.8 6 43 126 161 125 162 0.76

2 4 9.1e-12 9.4e-09 35.5 2.8 3 44 246 286 244 286 0.97

3 4 2.4e-12 2.5e-09 37.4 2.4 3 44 335 375 333 375 0.95

4 4 0.044 46 4.6 0.0 16 44 394 426 384 426 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.0085	8.8	6.8	0.8	6	43	126	161	125	162	0.76
2	4	9.1e-12	9.4e-09	35.5	2.8	3	44	246	286	244	286	0.97
3	4	2.4e-12	2.5e-09	37.4	2.4	3	44	335	375	333	375	0.95
4	4	0.044	46	4.6	0.0	16	44	394	426	384	426	0.82

Sequence Information

Coding Sequence: ATGAATCATACATTCAGATTCATGTACAAGAAGGCGTATGGAAGTCAGTTATGGTACTGTTGGTACTTCTTCAGTCGGTGCTGTCCTGCAAAGCTGCGAATAAACAATTCTGGAAAAGTGACGGAATGCATCGGAAGACACAACCATGACCCTCCAACTAGCTGGATGACACCAGATGGTGATGACTTGGTGCAGTGTGTTCCAACGAAGAAAGGGCACCAGATAATGTTCCAAGGCTACACGTATGTGTTTAAATGTAAGCTGCAGTGTGGAGCTGAGCAGTGGTGTTGTTCTTATAGGCAGAAAACTGGTTGCATTTCCGTGATAAACATGCAAACTTATGGTGTTGAAGTTCTACCAGAGTGGGTGCCGATATACTTTATGATGTTAAGTGATAATAAATACAAGTGTAACATATGTGACTCGGAGGTGGATGTTACGGAGAAGTGTCTGGAATTGGTGATTCACTTGCAGGGGTGTCATAAGGAAGTGTATGAGCTTCATAAGGATAGTTCCGATGCAGGTGTCGGCTACCAAATCGAGTTCCTACAGTTTAGTATGAAAGATGTCGATCTCAAGAATGACTCTGTCATCTTGGGGGAGATTTGCGAAACACCCGAAGTTCTTAAGGATGCTCCGAAGGAAGAATTGGACCAATCTGACTTTTTATTGCTTCCCAATAAACAGGAGGAAAAGCATAAAGCTATTTTAGAACAAAGCAGAAAACGGAGTTGGGTATGGAAGTATTTCGAGCAATTGACCAAAACAATATACAGATGTTCGCTATGCAGCGTAGTTCTTTCAATAAAAGGCAGTAATTCTAACAACATGAATAGACACATAAGAACGCGGCATTCTGCAGTTTTCGCGTCAGAAATCACTACGAAAGGCGGTCAAGATGATGACGTCATAGGTGTCAGTATCAAATGGGACACTCCTAAAGAAGGAAGCGTGGAAAAAGTGGCGGGAAGCGCACGAACAAAGAAGCCCAGACGCAGTTGGGTCTGGTCGTACTTCAGCCTGGTATCAAGAACTAGAGCTCGATGCAAACTTTGTAAGCGAGTGATCAGCCATGGTGGTAATGCGACTGGTAATATGAACAGGCACTTGAAGATTGTGCATAATAAATGGGGAGACGGCAGCCATTGGGTCTGGAAAGTATTCAACGTCGGCGACAACACGTATTCTTGTAAAATATGTCAATACGAATTTATAAAATTCGATAACATAGAGAATAGCATACAGACTATACTAGATCATTTGAAAAGCGAACACAACGTCGTTTCGGGGTCACAGATAATAACAAGCGCTACATTTGAAGTAAATAATGATTAG
Protein Sequence: MNHTFRFMYKKAYGSQLWYCWYFFSRCCPAKLRINNSGKVTECIGRHNHDPPTSWMTPDGDDLVQCVPTKKGHQIMFQGYTYVFKCKLQCGAEQWCCSYRQKTGCISVINMQTYGVEVLPEWVPIYFMMLSDNKYKCNICDSEVDVTEKCLELVIHLQGCHKEVYELHKDSSDAGVGYQIEFLQFSMKDVDLKNDSVILGEICETPEVLKDAPKEELDQSDFLLLPNKQEEKHKAILEQSRKRSWVWKYFEQLTKTIYRCSLCSVVLSIKGSNSNNMNRHIRTRHSAVFASEITTKGGQDDDVIGVSIKWDTPKEGSVEKVAGSARTKKPRRSWVWSYFSLVSRTRARCKLCKRVISHGGNATGNMNRHLKIVHNKWGDGSHWVWKVFNVGDNTYSCKICQYEFIKFDNIENSIQTILDHLKSEHNVVSGSQIITSATFEVNND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01193744;
90% Identity: iTF_00357808;
80% Identity: -