Ccro022116.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- -
- Assembly
- GCA_905220415.1
- Location
- HG991981.1:4106160-4106967[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-06 0.00069 19.7 0.0 2 31 13 41 12 42 0.95 2 2 1 3.3e+02 1.5 0.0 9 23 138 152 138 155 0.84
Sequence Information
- Coding Sequence
- ATGCCGCCTGTAAAAGGACAAATGTTCCGTTATTCTGAAGCTGATATGGAAGCGGCTATACAAAAATGTAGGCGAGGCGTCCCGACAGATACTGCGGCAAAAAAATTCGGCGTACCAAGAAATGGCAGACCTGGAAAAAGATGGTACACCAGCTTTTTAAAACGTCATCCAGATCTTATAACAAGACAGCCCCAAAACTTGACTGCTTCCAGAGCTTCTGTAACAACATCTCAGTTGAAAAATTGGTTTGAAGAAGTTAGCAGTTACTTGAATGATAATAGTCACAGTGACATTTTGAATGAACAGCAAAGAGTTTTTAATATGGATGAGACCGCTTTTTTCCTAAATCCTAAAAGAAGTAAGGTCCTAGCTAGGCTTGCCAGGTGTCCGGCTTTAGCCGGACATGTTAGGCTTTTTGCAGTCGCGTCCGGCCAAATATGTACGTGTTTGGCCTGTCCGGCTTTTGTCAGGCTTTTTGTCAGAGTGGCGATTCGTACGACGATGGGCGGACGAGTGCCCGACCCGAACGGACAAGGGCGAGCGGAGAGCAAACTATCTTCCGGACCGCGATTCGCGCCGCGCCGCGCGTTGCGTGCGTGA
- Protein Sequence
- MPPVKGQMFRYSEADMEAAIQKCRRGVPTDTAAKKFGVPRNGRPGKRWYTSFLKRHPDLITRQPQNLTASRASVTTSQLKNWFEEVSSYLNDNSHSDILNEQQRVFNMDETAFFLNPKRSKVLARLARCPALAGHVRLFAVASGQICTCLACPAFVRLFVRVAIRTTMGGRVPDPNGQGRAESKLSSGPRFAPRRALRA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -