Ccro009206.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- -
- Assembly
- GCA_905220415.1
- Location
- HG991960.1:5368275-5368957[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-07 3.9e-05 23.7 0.0 19 38 33 52 17 55 0.77
Sequence Information
- Coding Sequence
- ATGGTTAGTAAATATAAGCGTAAAACATCACAAGCCTCATGGCAATGCTCAACTATGCAGCAAGCAATGCGTGAAGTGCAAGAGTTAGGAAAACCTGTCAAAAAAGTAGCAACTAAATATGGGATTCCAAGAACGACATTGCAAAGACATCTTAAATCGGGTTCGTGTAATGAGCTAATTGTTAGGTTTACTACTGTCTTTTCTACGGAACAAGGCCTGCCCACTTTACCCAACTACTGCCCGTTTTGCCCTAAACGAAAGCCCGCTTTAGGCCTCCCCTTCGGGCAAAGCAGGCAATCGTAG
- Protein Sequence
- MVSKYKRKTSQASWQCSTMQQAMREVQELGKPVKKVATKYGIPRTTLQRHLKSGSCNELIVRFTTVFSTEQGLPTLPNYCPFCPKRKPALGLPFGQSRQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00358494; iTF_00358495;
- 90% Identity
- iTF_00358494; iTF_00358495;
- 80% Identity
- iTF_00358494; iTF_00358495;