Basic Information

Insect: Colias croceus
Gene Symbol: -
Assembly: GCA_905220415.1
Location: HG991988.1:1300080-1307015[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 4.8e-12 1.6e-09 37.7 0.0 2 36 204 238 203 245 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	4.8e-12	1.6e-09	37.7	0.0	2	36	204	238	203	245	0.92

Sequence Information

Coding Sequence: ATGGCTCCTATCAAATGCTGTGCTGTCGGTTGTAATTCAACCAACAATACTCATCGCCTTTATAATTTACCAAAGGACGATAAACTTAGGGCTTTATGGCTGTCGTTTTTGGCGCCAGTGAATTGTGAACTTCTTGGTCTATCAAAAGATCAGTTAGTAAATAAACGTGTGTGCCAAAAACACTTCGATAGATATCAACTGGATGACAAGGGTAACCGTCTCAAAGATGGTTATCCATGTCTTTTTTCTACTGAAGAAGTCAAGCATGGGGTGCCTTTATCTGGTGATCATTATGATCATAACTACAGTAAAAAGGAAGACATTGAGGAAATTGTGGAAAATCCAGTTGTTGTCCGAGGTAATGATACCGTAAAGTGGGGTATTTTGGAAACCATGGGGTTAATTAAAACTTCAGAAATAAAATATTTAAGAACTGATATTTTATTTTTTTCTACCAATAGAATATTATTTTTATCATCTGGCAACACTAATACTAAAGCAGTAGTACGAGACAAAATTTTGAGTTTTAAAACCATGGTTCGAACATACACTAGAAAATATTCAAATATAAGAAATGGAAAGTCACATTTACCGTATCAGAACTACCAACCGGAAAACTTACAAGCCGCCATCAATAGTGTAAAAGAAGGAAGAATGAGTCTTACAGATGCAGCGAATACGTACGGTGTGCCAAAGAGTACCCTGAGTAGAAAAACTAGGAATATCAACTGCTCGCAAGAGAAGGCTGGTCATCCGACCTTATTTTCACCTGAAGAGGAGAGAATTTTCGTTAAATTTATTTTAGTAGTAGGCGAGTGGGGCTTTCCATTTGATTCGACTGATCTCCAACATCCAGTTGATCATTTATATTCAGCAGATATATTTGCAGACCCTCCTGCATCTTCCTTTCTCAATACTGATTTCAATGTCTTTGAGTCAAGTGAAATACCATCAACAAGCAAATGTGAAAAATCATCACATCATAATATACAGATTGACCCTTTGGGATCCCAAGATGTGATTCAAAGTGTGGGTCAAACTCAATTGAAAAATAAAGCACCAAAAAGATTTGTTATTAGCAGAGCAGCTATCAAATTGTCCTCACACAGCAGATGCTTTATAAAAAAAATGAGGAAAATTGCTGTCGAAGAAAACAAGACTCAGAAGCCATTTTTGCAAAGATTGGATGCTGCTAAGACAATTAGCTGCAGCCAATTGTTTAATAAAAATTTTGAGAAAATGTCACAACAAGCCCAAGATTTTCTATTCATGCAATTAAAAATGGCAAACAGAAAGAAGAAGGCAATGAGATACACAACCAGTGAAAAGCATTTGGCGTTGACCCTAATGAAAGAAAGCCCGAAAGGATATCGGTTGCTCCAAAAAATATTTAATTTGCCCAGTAAACGAACTTTAAATCGTTTGGCTGAAAATATCATTTTCAATGTGGGGCTAAATGACAATATTTTTCGAGTAATAAAGCATAAAACACAGAAATGGGACACAAAGAAGAAACTGTGTTCTATTTTGTTTGATGAGGTTGCTCTTACACCTCATCTCACTTATGTTGAGTCCCAAGATGAGATAAGAGGATTTAAAGACTTTGGGTATGGAAGAGCACTAAGGTTTTGCGATCATGCCTTGGTATTCATGCTAAAAGGAGTGTGCTCAAACTGGAGACAACCTATATGTTTCTACTTTTGTGAGGGAACAACTGCAGGTGCTACAGTAGTTAGAATTTTAAAGGAAGTGGTCACTAAAGTGTCAGAGTCAGGGCTGATACCTTTAGCTCTTGTATGTGACCAGGGCTCGACTTTTAGAACAGCCATAAATATGTTGAAATTGGAGACTGCACGCAAAAGGATTTTAAATGATGAATGCAATGATGGAACTATTGAGGTGTCAGGACGACAGTTAAGTGTAGTGTTTGATCCCCCACACCTACTTAAGGGCCTTAGGAACAACCTGCTCACGAAAGACATGCTCTTCAAAGGCCAAGTTGCCACATGGAAGGATATACAAACAGTATTTGATGCTGATTGCCAACTAGGTCACACTAGAATGCATAAAAAGCTGACAGAGCACCATGTTTACGCAGCAAAAATGAAGAAGATGAAAGTTAGTGTAGCTGCCCAAACTCTGAGTGCAACTACCAGTGGAATGCTTAAATACACTGCATTGTTCAAAACTACAGCCTCGGGTCAAAATGTCAGTGAGACAATGGCCACAACAGGCGAAGCTGTGGAGTTCATTGACAAGCTATTTGATAGTGTGAACGGTTCTCGAGGAAGCACTGTCCGGGGCAAACTGCGTGGACCTATAAAGCCAATAACACATCAAATTTTCAGTTTTTGGACAGAAGCCAAAAAAATATTGAAAAATATAAAATTTATTGATGCAAATAGCAAGAAAGCTCGAAAAAATAATAAAATCTATAAGGTTCGAGTTCCTTCTCTTAATGGATGGGTTACAACTGTCGAGAGTTTTGAAAGGTTGTCTAAACTGTTGTTCGAAAAATATGAAATAGAATATTTTTATCCTAGAAATATAAATCAGGATCCTCTAGAGAACTTTTTTGGTAGGATCAGAGCCATCAATTATAGGAATGTCAATCCTGATGCAAATACATTTATGAATGCGTTTAAATCCTTACTGATGTCCAATGTTATGGGTCCACATTCGATATACGCAAACTGTGAGGATGATGTAGGAGACACAGTAGTCGATTTTTTAAAACTCATATCCTCATCCAATGTTGATGAGAGTTCCTCATCAACATTTGATGAGGATAAAGAAAATGCCACGTGTACTAGACCCATAATAGCAAATAACATCAGCAGCAGCAATTGCAACCAATCTCTAAACACAGTGAATGAAAGATTGCGCGTGCACTCTTCTGCATATACAGCGGGGTATATGTGCAGGAGAGTGACAAAAAAATTTAAGTGTAGGAGATGCTCTGAGACTTATACCCAAAAAAAAAGAGATATATTTCATAAATGGATCGAACAAAGAGAATACACCCTTTTAAAACATCGCAATAATTTAACCTATCCATCAAAGAAATTTTTAATGTTTTATAGGGATATCTCGGGCCTTATACATGATTACTTGAATAAATATGCATATGAAACATGTTTAAAAAAACGTATAAAAATACAAATATTAAAACGATTTGATGTAAATTGGTTGGGGTGTACACATCACAAAACAGAAGCAAAAGAGTGGTTGCTCAATTTAATGATACGCACCCATGTGCATAATTGGTGCAACATAATAAATAAAATTTTAAAAGGAGGTGTGCAAGAAAAACTTATTAAACAGATGTGTGCACCTCAACAAATTGCTTTTGAAAAATATAAAGCCCATAGGCTGAGGAAAACTAAATAA
Protein Sequence: MAPIKCCAVGCNSTNNTHRLYNLPKDDKLRALWLSFLAPVNCELLGLSKDQLVNKRVCQKHFDRYQLDDKGNRLKDGYPCLFSTEEVKHGVPLSGDHYDHNYSKKEDIEEIVENPVVVRGNDTVKWGILETMGLIKTSEIKYLRTDILFFSTNRILFLSSGNTNTKAVVRDKILSFKTMVRTYTRKYSNIRNGKSHLPYQNYQPENLQAAINSVKEGRMSLTDAANTYGVPKSTLSRKTRNINCSQEKAGHPTLFSPEEERIFVKFILVVGEWGFPFDSTDLQHPVDHLYSADIFADPPASSFLNTDFNVFESSEIPSTSKCEKSSHHNIQIDPLGSQDVIQSVGQTQLKNKAPKRFVISRAAIKLSSHSRCFIKKMRKIAVEENKTQKPFLQRLDAAKTISCSQLFNKNFEKMSQQAQDFLFMQLKMANRKKKAMRYTTSEKHLALTLMKESPKGYRLLQKIFNLPSKRTLNRLAENIIFNVGLNDNIFRVIKHKTQKWDTKKKLCSILFDEVALTPHLTYVESQDEIRGFKDFGYGRALRFCDHALVFMLKGVCSNWRQPICFYFCEGTTAGATVVRILKEVVTKVSESGLIPLALVCDQGSTFRTAINMLKLETARKRILNDECNDGTIEVSGRQLSVVFDPPHLLKGLRNNLLTKDMLFKGQVATWKDIQTVFDADCQLGHTRMHKKLTEHHVYAAKMKKMKVSVAAQTLSATTSGMLKYTALFKTTASGQNVSETMATTGEAVEFIDKLFDSVNGSRGSTVRGKLRGPIKPITHQIFSFWTEAKKILKNIKFIDANSKKARKNNKIYKVRVPSLNGWVTTVESFERLSKLLFEKYEIEYFYPRNINQDPLENFFGRIRAINYRNVNPDANTFMNAFKSLLMSNVMGPHSIYANCEDDVGDTVVDFLKLISSSNVDESSSSTFDEDKENATCTRPIIANNISSSNCNQSLNTVNERLRVHSSAYTAGYMCRRVTKKFKCRRCSETYTQKKRDIFHKWIEQREYTLLKHRNNLTYPSKKFLMFYRDISGLIHDYLNKYAYETCLKKRIKIQILKRFDVNWLGCTHHKTEAKEWLLNLMIRTHVHNWCNIINKILKGGVQEKLIKQMCAPQQIAFEKYKAHRLRKTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00358692;
90% Identity: iTF_00358692;
80% Identity: iTF_00358692;