Ccro002266.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- -
- Assembly
- GCA_905220415.1
- Location
- HG991962.1:217662-218270[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.7e-13 1.5e-10 41.0 0.0 2 36 26 60 25 68 0.92
Sequence Information
- Coding Sequence
- ATGGTTCGAACATACACTAGAAAATATTCAAATATAAGAAATGGAAAGTCACATTTACCGTATCAGAACTACCAACCGGAAAACTTACAAGCCGCCATCAATAGTGTAAAAGAAGGAAGAATGAGTCTTACAGATGCAGCGAATACGTACGGTGTGCCAAAGAGTACCCTGAGTAGAAAAACTAGGAATATCAACTGCTCGCAAGAGAAGGCTGGTCATCCGACCTTATTTTCACCTGAAGAGGAGAGAATTTTCGTTAAATTTATTTTAGTAGTAGGCGAGTGGGGCTTTCCATTTGATTCGACTGATCTCCGTATTTTTGCCCAGAAATACCTTAATAAGATTGGTAAAAAAGTATATGGGCTTAAAGACAATATGCCCGGGGTGGATTGGGCCCGTAATTTTCTTTTAAGATATAAGTCACAAATTTCAAATCGCAAATCTGCAAATATTTCTAGTGATCGAGCAAGATTTACGCCACAAGATATAGATGCCTTTTTTGAAAATTATGGAAAAATAGTTGAAGGTGTTGCTGAAGATTGTATAATTAACTATGACGAAACTAATTTGACGGATGACCCCGGAAATAAAAATTATATATACAAGTGA
- Protein Sequence
- MVRTYTRKYSNIRNGKSHLPYQNYQPENLQAAINSVKEGRMSLTDAANTYGVPKSTLSRKTRNINCSQEKAGHPTLFSPEEERIFVKFILVVGEWGFPFDSTDLRIFAQKYLNKIGKKVYGLKDNMPGVDWARNFLLRYKSQISNRKSANISSDRARFTPQDIDAFFENYGKIVEGVAEDCIINYDETNLTDDPGNKNYIYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00358455; iTF_00358457; iTF_00011870;
- 90% Identity
- iTF_00358455; iTF_00358457;
- 80% Identity
- iTF_00358455;