Ccro015461.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- -
- Assembly
- GCA_905220415.1
- Location
- HG991984.1:2631066-2635421[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8 1.2e+03 -0.3 0.0 29 34 64 69 64 71 0.86 2 2 6e-13 1.9e-10 40.6 0.0 1 38 70 107 70 109 0.95
Sequence Information
- Coding Sequence
- ATGTATTTAAAGCCCGAAAAAACTACCTATAAAAAAACATCACAAAATAAAACCAAACGCACTTCCGTACGCAACTATACCTGCGCCCGCGCAAGTCATGAGTCAGCGCGCGCGTGTCCTGCCGCTGCACATCTGCTGTGGCATCGGCGTGGGGTTCCGTGGGTCAGAGTGCTTAAAGTCACGATGCCTCCCAAACGGACATTGTGGTCAGAAGATGATCTGATCGCAGCTGTTAGAGCAGTACAAAGAGGAATTTTGAGTACGGATAAGGCTGCAGAGAGATATAAGGTTCCTAGAAGAACAATCAGAAATCATCTGCAGTCTGGCAGCTAA
- Protein Sequence
- MYLKPEKTTYKKTSQNKTKRTSVRNYTCARASHESARACPAAAHLLWHRRGVPWVRVLKVTMPPKRTLWSEDDLIAAVRAVQRGILSTDKAAERYKVPRRTIRNHLQSGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -