Ccro022698.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- -
- Assembly
- GCA_905220415.1
- Location
- HG991988.1:1578446-1580536[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.6e-14 2.1e-11 43.7 0.1 1 45 14 58 14 58 0.96 2 2 3.9 1.3e+03 -0.4 0.0 27 42 232 248 232 250 0.85
Sequence Information
- Coding Sequence
- ATGCCACCAACGAATCGAAAGAAAAGAGGAGAGTCTTGGACAGAAGACACAATGAGGGCTGCAATCAATGCTATACAAAGGGGCCAACTCACACAGAGAGCTGCCTCTGAAAAGTACAATATACCTCGTAGGACTCTTAGAGATCACTTAAAAGATGGAAATGCTAAAAAACGTTTTGGAAGAAAACCTGTTTTTTCTGAGAATCAAGAAGCAGACTTAGTCGCAAGAATAATAAGGTTTGCCAAAATTGGTATGCCTCTAACACCAAAATTTATAAAAAAACAGGCTTTTCTTTTCTGCGAGAAAGCTGCTGGGAAAGATTGGCTCAGATCTTTTTTAAAACGGAATCCGTCGATTAGCAAAAGGAAACCACAGATAATGAATCCAGCAGGAGCACAAAAGTTAAACAAAGCTAGTGTGCAACAACATTTTGAAGTAGTAGAAAAGTTATATGATGATTTAGATATCCGAGAACATCCTGAGAGGCTTTACAATATGGATGAGAAAGGTTGTCGTATAACAGTACATAACCAGCACACCGTTTTAGCTGAAAAGGGTAGTAAGAGAGTTCACCCCATTGCTCCCGAAAACGCTGAAAACGTCACGATAGCGATGTGTGTAAATGCCGTCGGTACGGCAATCCCACCGATGATACTGTTCAAAGGACAAAGGAAAAGAGCTGATTTAAAGAAAAATGTCCCAAATGGAACATTAGTACAAATGGCTCCAAAGGGGAGCATGACGTCAGACTTGTTTGTCGAATTCATTAAGCACCTAGCAAAATTCAAGGTTGCTGGAAAATGTTTGCTGATATTCGATGCTAAATGTCACCTATCAATAGAAGCACTTGATGAAGCTGAGAAAAATGATATAGTTTTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAAGTCTTTCGAACACCACTGGGATGAAGCTGTCTTAAACTTTTTGCACGAAAACCCCAATGAAATATTAACAAAGGCCACATTTAACCAATTATTTACGAAAGTCTGGTACAAGTGTATGACATATAATAATATCGTTAATGGTTTTAAAGCAACAGGTCTCTTTCCTTTCAATCCGGAGGCAATTCCTGAAGAGGCATACGCCCCATCGGTTTTGACGGAAATTCCGTACCCTCAGATTGAAGATAACTCTGTTCAGAACGCAGGTCCTCCAAATCAAAATCATTCAACGCAGGAAATAGATCAGCCAATGCAGGACATACGAGATAATGACGAAAATTCTTACAATCCATCATATTCTTCATTCCTTTCATCTGATAAGCAGCCTGTGAACTTTGACAACTACCAACATAAACCAGGGTTTCCTAGTTGTGAACAGCTCAGTAAAAAACCAAGAACAGATTACAATTTTCCAGTTGAGTCGTTGGATGCCGTTCGAGACAATAGTGGAGAAAAATTTCGTCTTGTGGATTATTATAGCTCATCTACAGAATTTTCAGAAGGGGAAGATACAAGAAAGGAAGAACATAATGTTCAATGTGCTTCATCATCTTCCATCTTGTCATCTAGTTGTTTGGAATTAAAAGCAAGTTGTTCAGGATTACAAAGAAACAGAGAAATTAGCCCTGTTCCCAGTACTGAAAGTTCCGCTGAGGGTTTTATCAATCAACAGCACAAATCTAAGCTTTCAGTTGCTGATGTATACAGTGGTTTGTCATCTGAAGAATTTGAAAGTGAACATGTTATGTTAAGTAGAAGTAACGTTACACCAAAAAAACAACCTACTAATTATTCATTGCCAAACTTTAACAGAATTAGTTCTGGCGACTCTACTTGCTCGCATGAGAGTGAAGACAATATTCCATTAAGCTCGCTTAGGAAACAAAATGACAAAATGTCATTTCAAGAACTTTTCCCAACGCCAAACTACGCAATAGTTAAAAATGAACGTCCGCGTAAAAAGGCGATGAACTACAAAGGCCAAAAAATTACTAAAAATCTGTTTATGGAAAACAAAAGAAAAGTAAAAGGGCAAAAGGCGAATAAAAAGAACAAAACACAAAGGAATTATGACGAAACTATAAAACGAGAATAA
- Protein Sequence
- MPPTNRKKRGESWTEDTMRAAINAIQRGQLTQRAASEKYNIPRRTLRDHLKDGNAKKRFGRKPVFSENQEADLVARIIRFAKIGMPLTPKFIKKQAFLFCEKAAGKDWLRSFLKRNPSISKRKPQIMNPAGAQKLNKASVQQHFEVVEKLYDDLDIREHPERLYNMDEKGCRITVHNQHTVLAEKGSKRVHPIAPENAENVTIAMCVNAVGTAIPPMILFKGQRKRADLKKNVPNGTLVQMAPKGSMTSDLFVEFIKHLAKFKVAGKCLLIFDAKCHLSIEALDEAEKNDIVLXXXXXXXXXXXXXXXXXXNKSFEHHWDEAVLNFLHENPNEILTKATFNQLFTKVWYKCMTYNNIVNGFKATGLFPFNPEAIPEEAYAPSVLTEIPYPQIEDNSVQNAGPPNQNHSTQEIDQPMQDIRDNDENSYNPSYSSFLSSDKQPVNFDNYQHKPGFPSCEQLSKKPRTDYNFPVESLDAVRDNSGEKFRLVDYYSSSTEFSEGEDTRKEEHNVQCASSSSILSSSCLELKASCSGLQRNREISPVPSTESSAEGFINQQHKSKLSVADVYSGLSSEEFESEHVMLSRSNVTPKKQPTNYSLPNFNRISSGDSTCSHESEDNIPLSSLRKQNDKMSFQELFPTPNYAIVKNERPRKKAMNYKGQKITKNLFMENKRKVKGQKANKKNKTQRNYDETIKRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -