Basic Information

Insect: Colias behrii
Gene Symbol: -
Assembly: GCA_029959075.1
Location: JARWMB010000025.1:3439602-3442456[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 3.8 3.7e+02 2.8 1.6 2 23 158 180 157 180 0.88

2 7 0.023 2.2 9.8 0.6 1 14 187 200 187 206 0.87

3 7 0.0021 0.2 13.1 1.3 1 23 217 239 217 239 0.99

4 7 3.5e-05 0.0034 18.7 6.2 1 23 252 274 252 274 0.98

5 7 5.8e-08 5.6e-06 27.4 3.0 1 23 279 301 279 301 0.98

6 7 0.0001 0.0097 17.2 0.6 1 23 307 329 307 329 0.98

7 7 2.4e-05 0.0023 19.2 2.9 1 23 335 357 335 357 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	3.8	3.7e+02	2.8	1.6	2	23	158	180	157	180	0.88
2	7	0.023	2.2	9.8	0.6	1	14	187	200	187	206	0.87
3	7	0.0021	0.2	13.1	1.3	1	23	217	239	217	239	0.99
4	7	3.5e-05	0.0034	18.7	6.2	1	23	252	274	252	274	0.98
5	7	5.8e-08	5.6e-06	27.4	3.0	1	23	279	301	279	301	0.98
6	7	0.0001	0.0097	17.2	0.6	1	23	307	329	307	329	0.98
7	7	2.4e-05	0.0023	19.2	2.9	1	23	335	357	335	357	0.98

Sequence Information

Coding Sequence: ATGTCGCCTCACTCGCAACTTTTTAATCGGGATTACTTTATGCGTGACGATGTGTGTCGATTTTGTTGGAGTAAAAATTCTTTCAATGCATTACACAGTGAATTAAGTGAAACCGAAATAAGTATATCTGAGAAAATCAAAGATTGTTTGGAAATTGATTTATCGCTAACGGAAAATCCGAATAAACTATGCCAGTTGTGTTTTAATAAAGTTGTAATGTTctatgattttaaaaaattctGCCAGGAGTCCGATCAAAGACTTCGAGAAATAATCAACGAAGAACATTCACATTCGAAAATTGAAATCGGCATACGCGTAAAGGAATTCGCGAAGGAATTTGACGATAGTAAGGGTTTTATAGAAAATTTAACGGATTCGATAGAAGAAAATGATGATCTTATTGACGCTGTAGTTTACGAATACGTGgaagataaaataacaaaacgtACAAAGAAAAGATCGCCAACATACTGTAATATATGTTGCTTAGAATTATACAATGAGGATGATTTGCGGAAGCATAAGTCCGAAAACCACGGTATAGAGAATGGTTTTTTTAAGTGTTTTGGTTGCGAAAAGACGTTCAAGAATTTAAAACTACGGCTCGGCCACGAGATTAATTTTTGTAAAGGCTTGAAAAATGGTTATAAATGTGTTATTTGTTCTAAATATCTGCCAACGAGAAGAGCTTTTGAACAACATAGAAGGAACCATAGGAGGAATATTGTTAAGGAGATACCACaggatatttttaaatgtgttcaTTGTGACAAGTTTTTTGATAATAGGGATACATTGAAACATCATTTAAAGGAACATGTGAAGAAACGGTACATATGtgagaCTTGTGGACGCGTTTTCACAAGAAAGGACTATTTACATAAACACATGAACACACACACGGGAGTGAAACAGTACGCCTGTACGTATTGCGACTTTAGAGCGAATCAGAAGACTGCGTTGACTATACACATACGAAAGCACACCGGCGAACGGCCATACAGCTGTGACGTATGTCCGCAAAAATGCACATCTAGTTCAAATTTGAGGGTACACAAACAAAAGCATCTTGGAGTCAAACAGTTTGAGGTGAGAgtctaa
Protein Sequence: MSPHSQLFNRDYFMRDDVCRFCWSKNSFNALHSELSETEISISEKIKDCLEIDLSLTENPNKLCQLCFNKVVMFYDFKKFCQESDQRLREIINEEHSHSKIEIGIRVKEFAKEFDDSKGFIENLTDSIEENDDLIDAVVYEYVEDKITKRTKKRSPTYCNICCLELYNEDDLRKHKSENHGIENGFFKCFGCEKTFKNLKLRLGHEINFCKGLKNGYKCVICSKYLPTRRAFEQHRRNHRRNIVKEIPQDIFKCVHCDKFFDNRDTLKHHLKEHVKKRYICETCGRVFTRKDYLHKHMNTHTGVKQYACTYCDFRANQKTALTIHIRKHTGERPYSCDVCPQKCTSSSNLRVHKQKHLGVKQFEVRV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00358937;
90% Identity: iTF_00358937;
80% Identity: -