Basic Information

Insect: Colias behrii
Gene Symbol: -
Assembly: GCA_029959075.1
Location: JARWMB010000025.1:5447099-5451026[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 8.1 7.8e+02 1.8 6.9 1 23 204 227 204 227 0.90

2 12 1.4 1.3e+02 4.2 0.1 2 23 253 275 252 275 0.92

3 12 0.0049 0.47 11.9 0.4 2 23 298 320 297 320 0.94

4 12 0.00046 0.044 15.2 2.0 1 23 324 346 324 346 0.98

5 12 0.28 27 6.4 0.9 1 23 351 374 351 374 0.93

6 12 0.28 26 6.4 8.2 1 23 389 412 389 412 0.92

7 12 0.00052 0.05 15.0 1.5 2 23 426 448 425 448 0.96

8 12 6.2e-05 0.0059 17.9 0.5 3 23 456 476 455 476 0.99

9 12 1.2e-05 0.0011 20.2 1.3 1 23 482 504 482 504 0.99

10 12 0.0008 0.077 14.4 1.2 2 23 511 533 511 533 0.95

11 12 5.8e-05 0.0056 18.0 0.6 1 23 539 562 539 562 0.97

12 12 6.6e-05 0.0064 17.8 0.7 1 23 568 591 568 591 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	8.1	7.8e+02	1.8	6.9	1	23	204	227	204	227	0.90
2	12	1.4	1.3e+02	4.2	0.1	2	23	253	275	252	275	0.92
3	12	0.0049	0.47	11.9	0.4	2	23	298	320	297	320	0.94
4	12	0.00046	0.044	15.2	2.0	1	23	324	346	324	346	0.98
5	12	0.28	27	6.4	0.9	1	23	351	374	351	374	0.93
6	12	0.28	26	6.4	8.2	1	23	389	412	389	412	0.92
7	12	0.00052	0.05	15.0	1.5	2	23	426	448	425	448	0.96
8	12	6.2e-05	0.0059	17.9	0.5	3	23	456	476	455	476	0.99
9	12	1.2e-05	0.0011	20.2	1.3	1	23	482	504	482	504	0.99
10	12	0.0008	0.077	14.4	1.2	2	23	511	533	511	533	0.95
11	12	5.8e-05	0.0056	18.0	0.6	1	23	539	562	539	562	0.97
12	12	6.6e-05	0.0064	17.8	0.7	1	23	568	591	568	591	0.97

Sequence Information

Coding Sequence: atggcAAATATTACACTTTACGGACAATGCCGGTGCTGCCTAGCGACGGGCAATCATAGAAATATAACGAAGGAATATTATCATAACAGTGTGAGAGAAGTTTATATGGATATCTTTTTGGATTGTTTTAATTTATCCCTATCTACAAGTAATGAAATAAGTTCCTTAATATGTAATTCCTGTATTGAACAATTACGAGAAGCGaacaaatttaaaacaatggTTGTGAATATCGAACAGAGACTTTTGTCCATGACCGATAAAGATACTATATTTATAAatgtaCCAAACAACATGCATTCAGACATCGAACTAGATGTAAAAATGGAGGGAACGTTGAACATAAAGGCTGAGTCGAGCAGTGATTTGGATAATGTCGATAATTCAGATGATCCCGATTTTGAAATGAACGACTATGATGATAGAGgtacCCCGGAAACTGACAAAAAAGTCGATagcaaaaagaaaaaaattaagaaagttAAATCTAGTGATGTTGCCGGTAAGAAAATGGGGCGGTctgcattaaaaattaattttcgtGAAAATGTACTTGAAGTATTGTATAATTCTAATGCATCGGCTATCAGAAGTTGTGTTGACTACAGATACACATGTTGTTTTTGCTCCGACTGTTACGAACGTCCGGAGGATTTGAAAAATCACAACTTGGAGTGTCACGATAAGTCCACCTTAAGGAATGCAATGAGGGAATATCACATGAACACAACTCTGAAACTGGATATAACTGGTCTACGATGTACCCTCTGTGATACTGAGATGGACATGTTAGATGATTTATTGAACCACCTTAAAGATATACACAACAGACAAATTCACACCGATATTGATAATTACATGGTTCCTCTTAAGTTCGAAGACGACGTTTTACGTTGCACATTTTGTCGACAGGAATTTGTCCAATTCAGACAACTAATGGCACACATAATTAATGTACACTATAGAAATTTTGTATGCGAAGTGTGTGACCATGGGTTTATAAGTAAGAATACTTATCGATCTCACCGCAAGATCCATGAAATTGGCAATTACAAATGCGACTACTGTGAAAGGGTTATGGATACTAGACccaaaaaattgaaacacgagAGGGTGACACATGGACGATCGAAGAATTTCGATGGCATAGCGTCCAAGTATGTGCATAAGTGCCATTATTGCCATCAAACGTTCAAGGAATATAGAAAGAAGCAAAAGCATTTAGCGGAAGTCCACGGGGTGAAACTGCCGCATTTACCGAAACTGCCCGGCTTGCAGTGCAAGGCTTGCGATCGCACGTTCCCAAATCGGCACGGATACACGATTCATTTAAAGAGGGTGCATCTAATGGAACGGAGACACGGTTGTAATGTGTGCGACATGAAATTTTTCACGTCCTACGACTTGAAGGATCACATGATCAGCCATTCTGGTGTGAAGAAGTATCAATGTGATATTTGTATGAAGTCATTTGGCAGGAAAAATACACTGCGTCAACATTTACGTATCCATGCGGATGATAGGAAGAATGTTTGTAGGCAGTGTGGAAAAGGCTTTATAAAGAAGTGTAGTTTGGCTGGCCATATGCGAGCTAACCATGCGGATGATAGGAAGTATGTTTGTGGGCAGTGTGGAAAAGGCTTTATAAAGAAGTGTAGTTTGGCTGGCCATATGCGAGCTAACCATGCGGATGATAGGAAGTATGTTTGTGGGCAGTGTGGAAAAGGCTTTATAAAGAAGTGTAGTTTGGCTGGCCATATGCGAGCTAAACATTCGGAGCTAGTATGA
Protein Sequence: MANITLYGQCRCCLATGNHRNITKEYYHNSVREVYMDIFLDCFNLSLSTSNEISSLICNSCIEQLREANKFKTMVVNIEQRLLSMTDKDTIFINVPNNMHSDIELDVKMEGTLNIKAESSSDLDNVDNSDDPDFEMNDYDDRGTPETDKKVDSKKKKIKKVKSSDVAGKKMGRSALKINFRENVLEVLYNSNASAIRSCVDYRYTCCFCSDCYERPEDLKNHNLECHDKSTLRNAMREYHMNTTLKLDITGLRCTLCDTEMDMLDDLLNHLKDIHNRQIHTDIDNYMVPLKFEDDVLRCTFCRQEFVQFRQLMAHIINVHYRNFVCEVCDHGFISKNTYRSHRKIHEIGNYKCDYCERVMDTRPKKLKHERVTHGRSKNFDGIASKYVHKCHYCHQTFKEYRKKQKHLAEVHGVKLPHLPKLPGLQCKACDRTFPNRHGYTIHLKRVHLMERRHGCNVCDMKFFTSYDLKDHMISHSGVKKYQCDICMKSFGRKNTLRQHLRIHADDRKNVCRQCGKGFIKKCSLAGHMRANHADDRKYVCGQCGKGFIKKCSLAGHMRANHADDRKYVCGQCGKGFIKKCSLAGHMRAKHSELV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00358020;
90% Identity: iTF_00358020;
80% Identity: -