Cbeh025771.1
Basic Information
- Insect
- Colias behrii
- Gene Symbol
- -
- Assembly
- GCA_029959075.1
- Location
- JARWMB010000025.1:1180685-1187359[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.016 1.5 10.3 2.7 1 23 222 244 222 244 0.94 2 10 1.2 1.1e+02 4.4 0.0 3 23 271 291 269 291 0.95 3 10 0.00096 0.092 14.2 0.8 2 23 313 334 312 334 0.95 4 10 0.19 19 6.9 1.5 2 23 339 360 338 360 0.96 5 10 0.00024 0.023 16.1 2.1 1 23 367 390 367 390 0.95 6 10 0.0049 0.47 11.9 1.7 1 23 396 419 396 419 0.93 7 10 0.00015 0.015 16.7 3.1 1 23 425 448 425 448 0.97 8 10 0.00056 0.054 14.9 3.1 1 23 454 476 454 476 0.97 9 10 2e-06 0.00019 22.6 0.7 1 23 482 504 482 504 0.98 10 10 2.2e-06 0.00021 22.5 0.6 1 23 510 533 510 533 0.98
Sequence Information
- Coding Sequence
- atgagtgTTACTAAAACCCAGGGGCCCTTATACGATCCCGGGCTCTGTAGATGCTGtggtaatataaaaaaatgtcgcATTTTAAACGTTGAATACACGCATCATGGTCAAAAAGAGATTTATTCTGATCTGTTTGTCGATTGTTTTGGTTTACTGCTATCTCAACTAGACGGAGAGCCAACAGAACGGCTGATATGCGCAACATGTGTTACAAGACTGCGGGAGGCCAACTGTTTTAGATTACAAGTTCTACAGTGTGAAGAGAAGCTGCTTACCACGAAAGTTAATGGTTTTGACAACGATGATCAaggaaaagaaataaaatgtgacACAGTTATCAAGGAAGAAGTGAATATATTGATTGAACCAGAATATGATGCAGAGCCCATAGATAACCATTCAGATGATGAAAAACCACTAATAACAAGGAAAAAGAGGAAACTAAAGAAGCTGCGCAAACGCAAGCGAGAGAAACTAGATGTGACTGAAGAGATGCTAGCCGAGATGCAGCGGATGAGCGAGAAACTAGAGGAGATGCAGTATGTTGAACCAGCACCACAGAAGCCGGAGAAGAAATCCAGCGAAGACATGAAAGCGTTCGCGAACGTCATAACAATAGTCGAAAATTCGTATGTCTGTCCCTTCGATACATCCTTCAGTGATTATTTCTGTATATACTGTAGATGCGTATTCACAGACCCTACTAAATTAAGGGAACACACACTAACACACGACCCGAACACGTTCAAACAAGTCCTGTCAAACTACacgaacaataaaaaaattcaaattgacATTGACAGGATAGACTGTCGTCTATGCCCGGAAGTGATAAGTGACATTGACGTTTTCAAACGTCACGTGACGTCACACGGGAAGGAAGTGCACAAGGCGCCGAACGATTTTCTAAAATTCAAACTAACTTCGGGAAAGTTGTATTGCTTAGAATGTGGCAACGCTTTTAGTTTTTTTCACGCGCTAAAAAAGCACATGGCGGAACATTTCGGTACTTGCATTTGTGATGTTTGCGGCGCGCATTATTTCGAAGAGCGAATGCTTGTTTTGCATCAAAAATCTCATAAACCGGTGGACGAAGTTTTCAATTGTAAAGAGTGCGGGAAGAATTTTAAATCGAAATACACTAGGTATATACATATCGCGCGGAATCATAAAAAAGAAGCAGCGTATCAGTGTAGTAAATGTGACGAAGTGTTTTTCTCGTATACCCTCCGGTATCGACACATGATAGACTATCATGGGGAAGAGAGATTGTTCAAATGTGATCAATGTGACCGGACATACGATAGTAGGAAGTCGTTACGGGAACATAATAGGCGGTTTCACTTGAAAATACTGAAACATGAGTGTCATTTGTGCGATAAACGGTTTTATTTACCGTCTCGTTTGAAAGAACACTTGGCTAGTCATACTGGGGAAAGGAATTTTCGTTGCGAATTCTGTGGTAAGAGTTATCCGAGATTACGAGGGTTAAAAGTGCACATGCAGTCGCATAATAGTGATAAGAAATTTAAATGTGTTATATGTAACGCGGCCTTTACGCAgaatgttaatttaaaaaatcatatcaagAGGCAACACCAAGGGTTAGATGTCAGTGAGGGTTATCAAGAGTGTAATTAG
- Protein Sequence
- MSVTKTQGPLYDPGLCRCCGNIKKCRILNVEYTHHGQKEIYSDLFVDCFGLLLSQLDGEPTERLICATCVTRLREANCFRLQVLQCEEKLLTTKVNGFDNDDQGKEIKCDTVIKEEVNILIEPEYDAEPIDNHSDDEKPLITRKKRKLKKLRKRKREKLDVTEEMLAEMQRMSEKLEEMQYVEPAPQKPEKKSSEDMKAFANVITIVENSYVCPFDTSFSDYFCIYCRCVFTDPTKLREHTLTHDPNTFKQVLSNYTNNKKIQIDIDRIDCRLCPEVISDIDVFKRHVTSHGKEVHKAPNDFLKFKLTSGKLYCLECGNAFSFFHALKKHMAEHFGTCICDVCGAHYFEERMLVLHQKSHKPVDEVFNCKECGKNFKSKYTRYIHIARNHKKEAAYQCSKCDEVFFSYTLRYRHMIDYHGEERLFKCDQCDRTYDSRKSLREHNRRFHLKILKHECHLCDKRFYLPSRLKEHLASHTGERNFRCEFCGKSYPRLRGLKVHMQSHNSDKKFKCVICNAAFTQNVNLKNHIKRQHQGLDVSEGYQECN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00358911; iTF_01562245; iTF_01193831;
- 90% Identity
- iTF_00358911; iTF_01562245;
- 80% Identity
- -