Basic Information

Insect: Colias behrii
Gene Symbol: -
Assembly: GCA_029959075.1
Location: JARWMB010000031.1:325134-333604[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00043 0.041 15.3 6.0 1 23 201 223 201 223 0.99

2 12 1.7 1.6e+02 4.0 0.0 1 23 230 253 230 253 0.91

3 12 2.5 2.4e+02 3.4 1.4 1 23 257 279 257 279 0.82

4 12 0.00027 0.026 15.9 0.6 1 23 284 307 284 307 0.96

5 12 0.037 3.6 9.2 0.1 2 23 312 334 312 334 0.94

6 12 8.4 8.1e+02 1.8 1.5 2 20 347 365 347 367 0.92

7 12 0.00014 0.013 16.8 0.0 3 23 380 400 379 400 0.96

8 12 0.061 5.9 8.5 1.0 2 23 407 429 406 429 0.92

9 12 0.0014 0.14 13.6 1.3 2 23 449 470 448 470 0.97

10 12 1.2e-05 0.0011 20.2 1.4 1 23 476 498 476 498 0.99

11 12 1.5e-06 0.00014 23.0 2.0 1 23 504 526 504 526 0.99

12 12 3.4e-05 0.0033 18.7 1.3 3 23 534 555 532 555 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00043	0.041	15.3	6.0	1	23	201	223	201	223	0.99
2	12	1.7	1.6e+02	4.0	0.0	1	23	230	253	230	253	0.91
3	12	2.5	2.4e+02	3.4	1.4	1	23	257	279	257	279	0.82
4	12	0.00027	0.026	15.9	0.6	1	23	284	307	284	307	0.96
5	12	0.037	3.6	9.2	0.1	2	23	312	334	312	334	0.94
6	12	8.4	8.1e+02	1.8	1.5	2	20	347	365	347	367	0.92
7	12	0.00014	0.013	16.8	0.0	3	23	380	400	379	400	0.96
8	12	0.061	5.9	8.5	1.0	2	23	407	429	406	429	0.92
9	12	0.0014	0.14	13.6	1.3	2	23	449	470	448	470	0.97
10	12	1.2e-05	0.0011	20.2	1.4	1	23	476	498	476	498	0.99
11	12	1.5e-06	0.00014	23.0	2.0	1	23	504	526	504	526	0.99
12	12	3.4e-05	0.0033	18.7	1.3	3	23	534	555	532	555	0.97

Sequence Information

Coding Sequence: atgagtgAATTAATAGCGTGCCGTGTGTGTTTAGTGTTTGATAATGtgcaattatttaaattaagtaaatatgaatTGGTGGCAGCATATGAATTTCTAACTGGAAGTCAGATGTCCATAAACGATGGCCTACCACAATACCTATGTACGTACTGTAGGGCTCAACTTATCAAATGTATGGTGTTTAAAAACAAATGCTGTAACACGCAGGATACTTTGAGATATATGTGCGAAGAGCAGGGTGGGATAACGATAACAGACATACTCAACCTCAGTAAACCGCTAAATCTCAACCAATTAACGATAACAACAAACACAACAACAATAGACATAGAATATAACGAAACAGAGATAAAGGAAGAAGTGGAGATTAAAGAAGAGATTGAAGAACCAAAGAAGAGAAGACACAAGAAGAAAGAGTACGTAGAAATCAAATATGAAGACAACGACTTAGATCTACTTTCTTATAGCGATAATGAAATTGATAACACGCAGAAGGAATTTGAAGACTTTAACGttgaagttattattttaacgaAGGAAGAACAAATACAAGAAATAGAAGCTAGAAAGAATTcgtttaattatttaaactcTTATTTTAAATGTGATAAATGTTATAAAGGGTTTATCACACATAAGACGTATAAGAATCATATGATGCGGCATGACCCGAGTAGAGGCAACTACGTATGCGATGTTTGTCTGTCCGTCTGGTCGGAGGAAAAAGCCCTAAGAGCTCATATAATAACTTCACACCAGAGGAAATATGTTTGTAAGCTGTGTGACCACGTGTCTAGATCAACaaatcgCGCGAAGGAACATAATAAATGGCATAACGGATACACGTTTGATTGTAAAATATGTGGAGCTTCATTCTCcAAATCGACAAGCCAATTAACACACATAAGACTACAGCATCCGACGAACAATTCATGTGATATCTGTGGAGAATCTTTCCTTGGAGAATACGGACTAAGAATGCATAAGAAAAGGGCACATTTGAATGTTGATgagaCAATCGAAGATTACGCGAATACATGTGAAACATGCtgtgttaaatttaaaagtgaTGACGCTATGAAACGTCACTTGACATACAGTGGTGACGGCAAGTGTGTGCCGGTGTTGAGaCCTTGTCCCGAATGTGGAGAGGCTTTCGAATCAGAAGAAATGTTGGAAAAACACGCGAAAGAACatccgctagatggcgctgtcaCTTGCTTTGAGTGTAACAGGTCATTCGCGAACGCACGCTCGCACGCGACACACGTGCAACGAGTGCATTTGGGTATCAAGATGAAACAGCCCTCGAAACCGGGGAAACGACGCCCGGAGACGGTTGTGTGTGAAATATGCGGGAAAGAGTGTATTacaaAAGCAACCCTAATTTGCCATCAACGGATACACTCTGGTGAAAAACCGTTCCAATGCAGTGAATGCCCGAAGAAGTTTAGCGTTTACCAACGTTTACAGATACACTTACGCACGCACACGGGCGAGTGTCCATACAAGTGCGAGCGGTGCCCGAAGGCGTTCAAACACAAGGCGGCTCTCAACAGGCACAGCCGGGTACACACGGGCATCAAACCGTACGGCTGTGCACATTGTGGTAAAACTTTTTCACAATCGAATTCGATGAAACTTCACGTGAACACAGTGCACTTACGACTGCCAGCGCCATATaggaataagaaaaataaataa
Protein Sequence: MSELIACRVCLVFDNVQLFKLSKYELVAAYEFLTGSQMSINDGLPQYLCTYCRAQLIKCMVFKNKCCNTQDTLRYMCEEQGGITITDILNLSKPLNLNQLTITTNTTTIDIEYNETEIKEEVEIKEEIEEPKKRRHKKKEYVEIKYEDNDLDLLSYSDNEIDNTQKEFEDFNVEVIILTKEEQIQEIEARKNSFNYLNSYFKCDKCYKGFITHKTYKNHMMRHDPSRGNYVCDVCLSVWSEEKALRAHIITSHQRKYVCKLCDHVSRSTNRAKEHNKWHNGYTFDCKICGASFSKSTSQLTHIRLQHPTNNSCDICGESFLGEYGLRMHKKRAHLNVDETIEDYANTCETCCVKFKSDDAMKRHLTYSGDGKCVPVLRPCPECGEAFESEEMLEKHAKEHPLDGAVTCFECNRSFANARSHATHVQRVHLGIKMKQPSKPGKRRPETVVCEICGKECITKATLICHQRIHSGEKPFQCSECPKKFSVYQRLQIHLRTHTGECPYKCERCPKAFKHKAALNRHSRVHTGIKPYGCAHCGKTFSQSNSMKLHVNTVHLRLPAPYRNKKNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00358882; iTF_01193824;
90% Identity: iTF_00358882;
80% Identity: -