Cbeh025731.1
Basic Information
- Insect
- Colias behrii
- Gene Symbol
- -
- Assembly
- GCA_029959075.1
- Location
- JARWMB010000025.1:694469-696201[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00065 0.063 14.7 2.1 1 23 101 123 101 123 0.98 2 11 0.00016 0.015 16.6 2.9 1 23 129 152 129 152 0.91 3 11 0.047 4.5 8.8 6.0 1 23 158 180 158 180 0.94 4 11 0.00043 0.041 15.3 3.7 1 23 185 207 185 207 0.97 5 11 1.9 1.8e+02 3.8 1.6 2 23 213 233 212 233 0.83 6 11 0.087 8.4 8.0 1.6 2 23 237 257 236 257 0.95 7 11 0.00024 0.023 16.0 1.1 1 23 263 285 263 285 0.99 8 11 1.9e-05 0.0018 19.5 4.8 1 23 291 313 291 313 0.97 9 11 3.3e-06 0.00032 21.9 1.8 1 23 319 341 319 341 0.98 10 11 0.0024 0.23 12.9 5.0 1 23 347 370 347 370 0.96 11 11 6.5e-05 0.0062 17.8 2.0 1 23 376 400 376 400 0.92
Sequence Information
- Coding Sequence
- ATGTCGGTGGAATTAAGTCTCACAGATGAAATCAACAAAGTGAAAGAAAACTCAGTCGTAGAAATTAAAACAGAAGAGCAAATAATAGTAGAGAATAAAAATGCTGATGTTGATGAACCAAAGTTTGAAATTGAAGATACTCAACTTGACTCCAGTGATACCATTCAAGATCTGCTGAGCAATTATAATTTGCGTAAAGTTAAACGTACAATAATCATTGAAGATGTGTACGGTAATCATGAATATGTACCGGAACAAAAGAAAACGAAGAAGAAAGAGAGAGAAAAGCCAGTGAACCGTTACAAATGTAATTTATGCAACAATACATTTACAAGTGAAACTACATTCAACAGCCACAAGATAATTCATCAAACAGATATGGAATATACATGTGACCTATGCAAGGAGACGTTCGACACAAACAAACACCTTATAAAACACAAAACAGCCAGGCACAACGACAATGACTGCTACCTATGTAAGAAGTGTAAATGTGCCTTCTCCGATCACCGATCTTACACTAACCACAGGATAGGCCACTTGAAACCTCCGTACAAATGCTTTGAATGCAACTTTCAATTCACAAAGAAGACTTCGCTTCAATCCCACATATTCTTGCATTATAATATACAAACTGAATGCAGTGTATGCAAGAAGATGGTCAATCACAAGAGACTGGGTTCGCATATGGAACAACACAATAGGATATCGTGCGTCGAATGTGGGAAGAAAGTCAGAAAATCGTTTTACAGTTATCACATGCACGTGCATACTGGTGTTAAGAAGTACCAGTGTTGGTACTGTGGTCAGGGGTTCTTTTCTAGCGGACAGAGGGCAACACACACACGGAAACACACAGGCGAACGTCCATACAGCTGCAGTCAATGCAGTCGATCATTCACACAATGTACCGATCTCAACAGACACATGTCACAGCATAAGCAATCTGCTAGCTATGATTGCGATCACTGCGGAAAGAAGTATTCAATCAAACAGTCGTTGATAACACACATGCGTATACATAGCAACTATAAGCCGTACAAATGCCCGTTCTGCTCAGAAAGCTTCCATACGTCTACGTACTTGACGCTTCATACCTATAAGAAACATTTAAAGCAGAATCGGTTTAAATGTGACGTTTGTAACAGAAGCTTCAAACTGAAAAATGACTATAGGAAACATTTGGCGACTAAGGAACATCATAAAATGGCGTATAAACTTACTATAAATGTTAAGATCCCTATTTAA
- Protein Sequence
- MSVELSLTDEINKVKENSVVEIKTEEQIIVENKNADVDEPKFEIEDTQLDSSDTIQDLLSNYNLRKVKRTIIIEDVYGNHEYVPEQKKTKKKEREKPVNRYKCNLCNNTFTSETTFNSHKIIHQTDMEYTCDLCKETFDTNKHLIKHKTARHNDNDCYLCKKCKCAFSDHRSYTNHRIGHLKPPYKCFECNFQFTKKTSLQSHIFLHYNIQTECSVCKKMVNHKRLGSHMEQHNRISCVECGKKVRKSFYSYHMHVHTGVKKYQCWYCGQGFFSSGQRATHTRKHTGERPYSCSQCSRSFTQCTDLNRHMSQHKQSASYDCDHCGKKYSIKQSLITHMRIHSNYKPYKCPFCSESFHTSTYLTLHTYKKHLKQNRFKCDVCNRSFKLKNDYRKHLATKEHHKMAYKLTINVKIPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00358905;
- 90% Identity
- iTF_00358905;
- 80% Identity
- -