Cbeh002207.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Colias behrii
Gene Symbol
-
Assembly
GCA_029959075.1
Location
JARWMB010000002.1:8303107-8311372[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.089 8.6 8.0 0.9 2 23 194 216 193 216 0.95
2 11 0.033 3.1 9.3 0.1 5 23 225 243 224 243 0.94
3 11 3e-05 0.0029 18.9 0.7 1 23 269 292 269 292 0.89
4 11 0.0027 0.26 12.7 1.4 2 23 326 347 325 347 0.96
5 11 8.8e-06 0.00085 20.6 4.0 1 23 355 377 355 377 0.98
6 11 0.00054 0.052 14.9 2.3 1 23 386 409 386 409 0.97
7 11 0.00024 0.023 16.1 0.2 1 23 415 437 415 437 0.97
8 11 9.5e-07 9.1e-05 23.6 2.9 1 23 443 465 443 465 0.98
9 11 0.00054 0.052 14.9 0.7 1 23 470 492 470 492 0.98
10 11 7.2e-06 0.00069 20.9 3.5 1 23 498 520 498 520 0.97
11 11 9.3e-05 0.0089 17.3 0.3 2 23 527 549 526 549 0.95

Sequence Information

Coding Sequence
ATGGCAATAGATTTCAAGAAATTGTGTCGACTTTGTGCTAAGAAAGAGCAAGTTTTGAAAGATTTAAATGAtgagaacagtaaaaacattttaaaaatgatACAAGATTTTGTGCAAATTGCTATATGTGAAAACGATGGTCTTCCAACTAAAATATGTCTCAATTGCGAGGAAAAAATTGTTTCATTTCAATTGTTTATTTTGGAATGTTACAAAGTTCAAGAAACATTACagaatatgtatttaaatgatTGTGAAAAGTATACAACTGATATAGAAGTCAGTGAATATCATATTGGCACCTCAGATATTAAACCTGAAgtCAAAGATGAAATTATAACAGATGTTGTGATAGctactattaaatCAGAAGACCCATATCAAGGTTTTGATGCAGAAATATATGAAAATGATGATATTGATTTCAAGAGTGATAGTGAAGACAGCATAACACTTGCCTCATTGAGAGAAGCTAAATTAAATGAACCAAAGAAGAAGGAAATGACCGAAGAACAGAAACAAGAATATGAAAGAATCCTTCTCAAGGCTGATGCAAAAATAAGAGATTTTGTTGCGATGAAATGTGAAGAATGTTGTGAATCTTTTAAGGTATGGGGAAGACTAAGATTACATTATATAAGAGCTCATAAGAAAAGACCATTGGCTTTCTGTATTTGTGGGTATGCAGTGAGATCTAAAAGTGCACTCTATAGACATGTATCAGAACATAAATCCAACATGCCTAGATTGTCGAAAAAGATCAATTATGTTGGAAATGATTTAAGGGCATCAGATCTAATTAAGTTTATTTGTGATAAGTGTGACAAAGAGTTTTCTAGTTGGTACAAATTGAAGAGTCACAGTGAATGGTTACACAAAGCTGCGCCAACGGTGAGATGTCGGTGTGGAATCCTCCTCAACTCTAGAACTGTTATGTATAAACACATTCAAGACCACAGAGCGCCTGATGTACTACacTGCGATAAATGTCCCAAAACGGCTAAAACAGTTGATGAACTAGAGAAACATAAATTACGGCACATTCCTAAGTCAGAAAGAAATTTCCAGTGCTCATCATGTGATAAAGTCTTCTCATCAAAGGACTGTTTGAAATCTCACGAAAGATCACATATACCTATAGAACAAAGAAAAATTTATCACTGTGATGTTTGTAATCTCAAGTTCACAACACGCTCGTCGGCCACATCGCACAAGCGCGTAGTGCACGAGAAGATCAAGAGCTACGTGTGCGACCTGTGCGGGTACGCGTGCGGCACCAACGGCGAGCTGCGCCAGCACCGCGCGATACACAGCGACGACAAGCCCTTCGAGTGCCGCAAGTGTTCCAAGGCATTCAAAACGTATTCGAACCTAAAGACGCACATGGACACGCACGAAGAGACGTCGTACGTGTGCTTCGTGTGCAGCCGCGTGCTGAACAGCCGGCGCACGCTGCGCAAGCACTTGCTGGTGCACGACGACAAGTGTACGCACGTGTGCACGTACTGCAATAAGGCCTTCAAGCGACGGCAGACTTTGAAGGTGCACCTGTCGATGCACACGGGCGACAAGCCGCTGTCGTGCAAGTGGTGCGACGAGCGGTTCGCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCGCGCACCCCGACAAGAGCGCGCACTACACCGCGTACGGCGCGCACATGCCGCAGgaatatttgaaaaatgacgCCGCACCCGTGAACGTGGCGAAAAGTGATGTAtag
Protein Sequence
MAIDFKKLCRLCAKKEQVLKDLNDENSKNILKMIQDFVQIAICENDGLPTKICLNCEEKIVSFQLFILECYKVQETLQNMYLNDCEKYTTDIEVSEYHIGTSDIKPEVKDEIITDVVIATIKSEDPYQGFDAEIYENDDIDFKSDSEDSITLASLREAKLNEPKKKEMTEEQKQEYERILLKADAKIRDFVAMKCEECCESFKVWGRLRLHYIRAHKKRPLAFCICGYAVRSKSALYRHVSEHKSNMPRLSKKINYVGNDLRASDLIKFICDKCDKEFSSWYKLKSHSEWLHKAAPTVRCRCGILLNSRTVMYKHIQDHRAPDVLHCDKCPKTAKTVDELEKHKLRHIPKSERNFQCSSCDKVFSSKDCLKSHERSHIPIEQRKIYHCDVCNLKFTTRSSATSHKRVVHEKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPFECRKCSKAFKTYSNLKTHMDTHEETSYVCFVCSRVLNSRRTLRKHLLVHDDKCTHVCTYCNKAFKRRQTLKVHLSMHTGDKPLSCKWCDERFAYASTLRSHRLRAHPDKSAHYTAYGAHMPQEYLKNDAAPVNVAKSDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01562188;
90% Identity
iTF_00358854; iTF_01562188;
80% Identity
-