Cbeh002256.1
Basic Information
- Insect
- Colias behrii
- Gene Symbol
- L
- Assembly
- GCA_029959075.1
- Location
- JARWMB010000002.1:8756823-8771527[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.6e-06 0.00015 22.9 1.7 1 23 89 111 89 111 0.99 2 17 0.69 66 5.2 5.8 1 23 117 139 117 139 0.97 3 17 9.2e-06 0.00089 20.5 4.1 1 23 145 167 145 167 0.99 4 17 2.8e-05 0.0027 19.0 0.1 1 23 173 195 173 195 0.98 5 17 4e-06 0.00039 21.6 0.1 2 23 211 233 210 233 0.96 6 17 6.8 6.5e+02 2.0 0.2 9 23 260 275 256 275 0.93 7 17 0.33 32 6.2 0.0 3 23 330 350 329 350 0.97 8 17 0.049 4.8 8.8 0.0 2 23 364 385 363 385 0.91 9 17 0.0001 0.0096 17.2 1.8 1 23 393 416 393 416 0.91 10 17 0.03 2.9 9.5 0.1 1 23 421 444 421 444 0.92 11 17 0.0064 0.61 11.6 0.2 1 23 504 528 504 529 0.94 12 17 0.00022 0.021 16.2 0.1 2 23 578 599 577 599 0.96 13 17 0.063 6.1 8.4 0.0 1 23 607 629 607 629 0.97 14 17 4.6 4.4e+02 2.6 1.1 2 23 637 658 636 659 0.92 15 17 0.57 54 5.4 0.4 3 23 737 757 736 757 0.95 16 17 0.006 0.58 11.7 0.1 1 20 765 784 765 787 0.95 17 17 0.071 6.8 8.3 0.2 1 23 794 816 794 816 0.96
Sequence Information
- Coding Sequence
- ATGATCATGTTATTCAAAGGCAATAGCAGCAGATTGGAGCATTTGATAGAGAAAATACAAGCTAATAAAGAAAATCACGACGTCTCCTCGGAAGATATAAAGGAGGCACTGGGCAGCGTGGGCAGCACGGCGGGCAGCTCCTGGCCCTCATCCACGCCGGAACCCTCGCCGTCTCCCGCCTCCACACCAACGTCAGCTGACGCGGTAGACCCGGAGGTGGAGGGGGAGCCGCCCTTCACGCTCGGCGCTACGGAACACACCCCCTATCAGTGCCAGTTCTGTGATAAAGCCTTCCCAAGGCTTTCTTACTTGAAGAAACATGAACAGACTCATTCTGATCAAATGCCGTTTCGTTGCGAATTCTGTTCGAGATTATTCAAACACAAGAGATCTCGAGACCGCCACGTCAAACTGCACACTGGCGATAGAAAATACCGATGCGCACACTGCGAATCAGCGTTCTCCCGCAGCGACCATTTAAAAATCCACATGAAGACGCACGACAACCAAAAACCGTTCCAATGTACGGTATGCAATCGTGGATACAACACTGCAGCAGCGCTCACATCCCACATGCAAGGTCATAAGCGAGATCGTGATGGACGCGAGGTCGACAGACGAAGAGCTTTGCGATGTGTCCGCTGCGGAGAGAGCTTTCGGCGACCTGATATGCTACAGGCACATATGACAACAGCTCATGGCGCTATGACTCCACCTCGTCGCGTGGCCTCTCAACCACCGCCTACACTTCTCGCGTGTATTTATTGTACTCGTGATACATTCACTAGCATGGAACAATTGCAGCTTCATGTGAGAGCATCACATTCGGCCCTATTAAATGGCGAAGGTCCAACAGTTACTGTAGAACAACCGACTCCAACTGATTTAAGCCGTCGAGGATCAGAAGGAACACCTCCAGTGAAACGGCCTAGATCAAGTTCAGGATCAGCTACACCTCAGACAGTTCTATCACCGAGTACATTGCTATGCAATCAGTGTGATGCGGCTCTACCAGATTTTGAAGCTTTCCGAGCACATTTGAAAGGTCACCTTGAAGAGGGTGGAAACTTAGCACAAACAAGTCCAATTCCCTGCTTACATTGCGGAGCGACATTCACAGATCCTGTCGCGTCGGAACGTCACCTAGCAGCACATTATTTGGCAGTGTCATGTGAATACACATGTCACAGTTGCGCTCGAAGTTTTTCCTCGCCTGATGACCTTCAAAAGCACCTTTTCGATCAACATGCACATAGCCTGTACCGTTGCACACTTTGCAAAGAGATCTTCGAATCAAAAGTTGCAATCCAGGTCCATTTCGCCGTAGCACACAGCGGGGAGAACAAAATCTGGGTGTGTCGTTCCTGCGGCTCCAACGGGGGTGCATTACGTTCAGAAGCGGAGTGTACTGCGCACGTACGCAACCGGCACGCAGCTGCGCGATGCGCGTGCGGTGCGGTGGTGGCCGGCGCGAGAGCTCTGCGGGAACATGCGGCGGCACACCATAGTTATAGGTGTCCAGTGCCCGCGTGTACTGATACCTTCGCAGTACAATACTTACTGGAACGGCACATGCAAGTCCATCATACTATTCCACAAGACGTAAACGGAGATATACCTCGGTCCAAACAATCGGAAAACAATAACGCTATAGAAAATGATTGTTCACCGTGTCTCACCGGCGAGAACCAAACAGAGGAGCGTAGACGCAAGAACGGTGCCGTTGCGTTGCAGTGCGCGTACTGCGGCGAGCGCACCCGCAGCCGCGCTGAACTGGAGGCACATACACGCGCTCACTCGGGCAATACGGCTGCAAGGCATAAGTGCCTCATTTGCGATGAAGTGCTGCCTTCCGCGGCCGTGCTCGCGGAACACAAACTTACACATTGCAAGGTAGTCGCTGGAGACACATGCGCGCGATGTCGCTCGCGGCTAACATCAGAAGAAGCGTACCTCACGCACATGGCGCGTCACCACCCCGCCCTCCCCGCGCCTTGTATCATTTGTCGACAAACTTTGGCTTCAGAGGCCGAAGCTCGACTTCACGCAAGGTTCCATCTTCGACCTAACGAGGACGAGCAGCGTTGTGCTATTTGTTTAAAAACCTTATCAGAGAGTGAAACCGGTGAAGGCGTTCGCGCATGTTCTTCGTGCTATGCGAGACATGCAGCGCCGCGTCCTCCCCCGCCGCCCACTGCAGACAATGACTGCAGACTCTGTCGGCGTTCCCTGGAATCGCCAACTCGACTCCAGACGCATCTCATAGAACACACTTTCGCCGGCATCGGCTCCTTCAGTTGCTACTTGTGTTCCGCCGTATTCACGAGCGCCGCTGGCTTGCAACGTCACTTACCCGAACATCCCGCTGCTTCGCGACCTTATGACTGTGCTCGTTGCGGCCTCAAGTTCTTCTTTAGAGCGGAACTCGATAACCATGCGTTAATTCATTTAGAAGAAGCTGAATTAGCTCAAAGAGCGTTCTATGAAGCTTACGCTAGAGGAGCTGCTTCGGCTTGGGCTGCGTTGCAATCTGATCCGTCTCCAAATACCACTACGGCTCCGGCACCAGAAGTTCAAGTGAAACAAGAGAATGAAATCAAAGAAGAGAGAAACGACGAATATATTGAAGTATCGTCACCACCTCCTGTGCGGCCAAGGTCATCCACACCTGTACCACCCGTTGTGAAACAAGAGAAGCCTGATGAAGATTAA
- Protein Sequence
- MIMLFKGNSSRLEHLIEKIQANKENHDVSSEDIKEALGSVGSTAGSSWPSSTPEPSPSPASTPTSADAVDPEVEGEPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDRDGREVDRRRALRCVRCGESFRRPDMLQAHMTTAHGAMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRASHSALLNGEGPTVTVEQPTPTDLSRRGSEGTPPVKRPRSSSGSATPQTVLSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGNLAQTSPIPCLHCGATFTDPVASERHLAAHYLAVSCEYTCHSCARSFSSPDDLQKHLFDQHAHSLYRCTLCKEIFESKVAIQVHFAVAHSGENKIWVCRSCGSNGGALRSEAECTAHVRNRHAAARCACGAVVAGARALREHAAAHHSYRCPVPACTDTFAVQYLLERHMQVHHTIPQDVNGDIPRSKQSENNNAIENDCSPCLTGENQTEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGNTAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCARCRSRLTSEEAYLTHMARHHPALPAPCIICRQTLASEAEARLHARFHLRPNEDEQRCAICLKTLSESETGEGVRACSSCYARHAAPRPPPPPTADNDCRLCRRSLESPTRLQTHLIEHTFAGIGSFSCYLCSAVFTSAAGLQRHLPEHPAASRPYDCARCGLKFFFRAELDNHALIHLEEAELAQRAFYEAYARGAASAWAALQSDPSPNTTTAPAPEVQVKQENEIKEERNDEYIEVSSPPPVRPRSSTPVPPVVKQEKPDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00430847;
- 90% Identity
- iTF_00771246;
- 80% Identity
- -