Basic Information

Insect: Colias behrii
Gene Symbol: -
Assembly: GCA_029959075.1
Location: JARWMB010000005.1:10095076-10103072[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.0056 0.54 11.8 1.0 3 23 744 765 743 765 0.96

2 23 0.053 5.1 8.7 0.6 1 22 1139 1160 1139 1160 0.95

3 23 7.8 7.5e+02 1.9 0.3 1 22 1202 1223 1202 1225 0.82

4 23 0.13 12 7.5 1.3 3 21 1236 1254 1234 1255 0.94

5 23 0.15 15 7.2 0.1 3 23 1264 1285 1262 1285 0.89

6 23 0.054 5.2 8.7 0.1 3 23 1305 1326 1304 1326 0.96

7 23 0.17 16 7.1 2.9 1 23 1332 1355 1332 1355 0.95

8 23 0.15 14 7.3 0.0 1 23 1381 1404 1381 1404 0.90

9 23 0.045 4.3 8.9 3.3 1 23 1409 1431 1409 1431 0.96

10 23 0.011 1 10.9 0.2 1 23 1437 1460 1437 1460 0.95

11 23 0.00014 0.013 16.8 1.5 1 23 1472 1494 1472 1494 0.97

12 23 0.00021 0.02 16.3 1.8 1 23 1543 1566 1543 1566 0.97

13 23 0.0033 0.32 12.5 1.7 1 23 1627 1650 1627 1650 0.96

14 23 0.0012 0.11 13.9 2.1 2 23 1670 1692 1669 1692 0.95

15 23 0.039 3.7 9.1 0.1 2 23 1698 1720 1697 1720 0.95

16 23 0.011 1.1 10.8 0.2 1 21 1764 1784 1764 1785 0.95

17 23 0.0014 0.14 13.6 0.6 1 23 1795 1817 1795 1817 0.93

18 23 0.00024 0.023 16.0 0.3 2 23 1908 1930 1908 1930 0.93

19 23 2.1e-07 2e-05 25.7 1.1 3 23 1937 1957 1936 1957 0.98

20 23 0.0026 0.25 12.8 0.1 2 23 1976 1998 1976 1998 0.96

21 23 0.14 13 7.4 0.0 1 23 2020 2042 2020 2042 0.97

22 23 0.014 1.3 10.5 0.4 1 23 2048 2071 2048 2071 0.95

23 23 0.00029 0.028 15.8 0.4 1 23 2079 2102 2079 2102 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.0056	0.54	11.8	1.0	3	23	744	765	743	765	0.96
2	23	0.053	5.1	8.7	0.6	1	22	1139	1160	1139	1160	0.95
3	23	7.8	7.5e+02	1.9	0.3	1	22	1202	1223	1202	1225	0.82
4	23	0.13	12	7.5	1.3	3	21	1236	1254	1234	1255	0.94
5	23	0.15	15	7.2	0.1	3	23	1264	1285	1262	1285	0.89
6	23	0.054	5.2	8.7	0.1	3	23	1305	1326	1304	1326	0.96
7	23	0.17	16	7.1	2.9	1	23	1332	1355	1332	1355	0.95
8	23	0.15	14	7.3	0.0	1	23	1381	1404	1381	1404	0.90
9	23	0.045	4.3	8.9	3.3	1	23	1409	1431	1409	1431	0.96
10	23	0.011	1	10.9	0.2	1	23	1437	1460	1437	1460	0.95
11	23	0.00014	0.013	16.8	1.5	1	23	1472	1494	1472	1494	0.97
12	23	0.00021	0.02	16.3	1.8	1	23	1543	1566	1543	1566	0.97
13	23	0.0033	0.32	12.5	1.7	1	23	1627	1650	1627	1650	0.96
14	23	0.0012	0.11	13.9	2.1	2	23	1670	1692	1669	1692	0.95
15	23	0.039	3.7	9.1	0.1	2	23	1698	1720	1697	1720	0.95
16	23	0.011	1.1	10.8	0.2	1	21	1764	1784	1764	1785	0.95
17	23	0.0014	0.14	13.6	0.6	1	23	1795	1817	1795	1817	0.93
18	23	0.00024	0.023	16.0	0.3	2	23	1908	1930	1908	1930	0.93
19	23	2.1e-07	2e-05	25.7	1.1	3	23	1937	1957	1936	1957	0.98
20	23	0.0026	0.25	12.8	0.1	2	23	1976	1998	1976	1998	0.96
21	23	0.14	13	7.4	0.0	1	23	2020	2042	2020	2042	0.97
22	23	0.014	1.3	10.5	0.4	1	23	2048	2071	2048	2071	0.95
23	23	0.00029	0.028	15.8	0.4	1	23	2079	2102	2079	2102	0.96

Sequence Information

Coding Sequence: ATGAATGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATATTCCCTACCACCAGTTCGGATGACTCGGAACCTCCTGTCCTTGTGTCGAAAATAAAGGATTGCGTGTCCGTTCAGATAAACGAAAATGACGAACTGCCCACTAATGTCTGCAGGAAATGCTTGGATAATGTCAATAACTGGCATATATTCAAGACAGTTTGTGAAAGGACACAAAACAAACTACAATCTCTGATTCATAAAGAGAGCAGCCATCTAGAAGAGGTTCACATTAAAACTGAACCAAATGAAGGATTATCAGATGGTGGATATGATGATGGGATTGCTATTGATGGAACATATCCAGATATTGAGAATGCCGGGCCCTCTAATAAAATCCAACCTGAAGGACCTCCAATATTGGCATCTTTGGGACTCACTCCAAGAAGTGATAAGAAATATATAGATCCCCGGATGGATTGGCAACGGGTGCATGCAATACTTGGTATAATTCAAGATGATGAAGTGATTGATTCACTACAAACAGTGGAAGAATGTGAAGTCTTGCACCAATCTGATCATGATTCAGATATGGAAGGTGATTTAACGGGAGCAGTGCCAGAAGACTGCCTCGATTGCAAAACTGGTTACATGTGCAAAAATAAAAGAGTTTTGTCCAAAAACCCAATCTTGCCGCTCGCTGAAAATTTAGCTATAGTAAAGAAACTTACAAACTTGAGAAAGCGAAACATAAAAAGTGTGAAAAGTTGCCAATTCCCTAAAAATGCATGGCAACTATTGGTCAGCGATGACTTACTAGAACTCATTGTTTCTTCCACtaatgaaaaaattataaagaaCTCAAATAATAAGGCCACCGATGTAagtgaaataaaaacattgattGGCATACTGTACTATCATGGCATAATGAGGCCAACACATCAGAAATGCAGTGACCTCTGGGACAATGACTTTGGATCTATTTGCATTCGAAGAACAATGAAGTATGATAGATTCAAGTTTCTTCTTGAGAACTTGAGTTTTGACAGTGAAGGTGATGACAGTTGTATTATGCAATTGGATATTATGAAACGCATTCGCAAGGTGTTTGAAATTTTTGCATTGAACTGTAGAACTGCTAAGGAAATTGGAAATACTGCAGTTATAGATGAACTTTTATTACCAGTCCATGGCCCGTGTCCATTTAGATATTCTATaaagaagaaagaaataaaGCAGGGAATGAAAATGGTACTTGTAGTGGATCCAACTAATTTTTATGTCAGCAACTTGGATGTTATAACAGACCCATATTTTGGTAATGAAGATATAACTACAAAATTAGTACAACATCTCGCAGGGACTGGAAGAACTATCTATATGGACTGTTGGTTTTCATCTGAGACATTAATAAACAGATTGAAAAAAGAATATAATTTGTATAGCATTGCTGCGTTGCACCCGAGTGATACAAACATTCCACCAGTATTTTTATCCCAGTATAGAAAGTGTAAGCCATTTATTAATGGTTTTATAGATGAAGACTTAGTTCTATCTTCTTATATTGATTCCAACTCGAAAGTGGTCAATATACTGACCAATGAtcctaattattataaaagagGTCATACAAGTCACACAGTTGTATCAGCTTACAAGAGAAACAAATCTGCAATTGAAGTTGTTGACGTTTTAATGCATTACTACACAACAAtgcagaatacaaatgattggACTATGTCACTGTTTTTTATGCTACTGAATATTGCTTCTGTTAACGCTCAAGTTATATGGAGCAGTGCTAATTCAACTAATGTAGTCCAGCGGCGTATGTTTATTCGTGATCTCGCTGTTAGTTTAATGGAATCAGATGAGTCGTCTCAACTTCTAGAAGAGTTCTTTATTAAACGGCCGAGGATGTCTGCTATAGGGAGTAATAGTGGGACAGGAATTAGGCAAAGAAAACGATGCAAAATTTGTATCAAATCAACCAAGAAGGATAGAAGAACAAGGCAAAGTTGCTTGAGATGTGGAACTTTTATTTGTAGAGAGCATACAGGCGTGGAAAGCGAAAAAGATGAAGAGGAAGAAGACGAAGAGATGAATGAACAACAAAACCTTCCGACCCCGCCCAATGTACCAGAAGTTTCTATTACGGTAATGCGCCCTACAGGAGAAACGTTACACGCACGGCAGGGCATACAGCAACTAGCTTCAAAGGATTGCCTAGTCTGTGGCCGATCCTACAGGTACTCACATAATGCCCGACGTCACGAACTCACGGCGCATAGCTTCGATagatatacaaataaaattacaaacaaaaaatcTAACCGCATGCAACCAAAACTGAGGCCTAATCCATTCAATCCTAAGGCCCGTTTAATGCCAAATCCTATAAGCCATAAAATGCAACTCATTCCAAATACTCCGATGGCCATTAAGATGATGCCACAAAAAACTATCATACCACCAAAACCCATTCCTATTAAGAATATCAAACAACAACAAAACAATCTGCCATATCCTTTACGTATTAAAGCATTAAAAGATTTGCAAATCAAAAAGAAAGAACCACAAATATTGAAGACGCTACTTACAACAAAGCCTGAGGTGCTAGTATCTGAACCTGAAATTCTCAACTCAGGTCCTGAGAGCCCTGAGACAGTAATATCAGAACCTGAAATAGCTTCTTTTCAAGTAGAGACTATTCTATCAGAGCCCGATGGATTCATAAATCATCAAGATGAGGGAGAAAATGATGAGGAAATGCAAAATCAAAGCCAGAATTATGACACTGTTGACATGGACTCTGATAATGAGATCGAAATCGCTCGTCAACATGAAAATCAAGCTGAAGGTGACCAAATTGATAATCAGAATGAAATGGAAACAGAGCAGACTCTAAATAACGAGGAAAATGAAAATGAGGAACAGAATGATACTGAAATTGAACCTAAAGAAGGTGAAGGCCAAGAAGATGTTAATGATGAAAATAACGAAAATGAAAAGAAAGTAACAGAAAATGAAGAAGGTAATGAGGAAAAAGAAGCAAATCAAGATGAAGAAAACCAAGATGATGCTTTCGATCCCGATCTACCGCCCCTAGCCCCGGTTGTGGAGATAAATGAAGATATGCAAACAAACTCATATAACAGCGAGATTAATGAAGAAGAAGAATTAGAACTTGACGACTCAGCCGACCCTAATGACGTAGTCGATGGCGATGATAAGGAACTCGATCCAGATAAACAGTACGTCACCAAAACGCAAAAGGAATTTATCCAAAAATATCGCGACATCATCGAACAGATCAACACTAAAAGATGTCTTTGCTGCAATAAAGAACACCCGAGAAGAAAAGCGGTTATACAACATTTGCAGAAAAATGGACACAAAGTACCGAAACATACTTGTTACAATTGTGTCGTAACCTTCACTCACATAGGTGCTCTGCTAAGTCACATGAGATCAAATACTTGCACTGATCTatggaaaataatttataatgaaaaTGGTATCAGTGATGATCAAGTTCTTGAAGATGAACCAAAAGATGTCAAAGTACAATACAAAGATATATTTAACGCTAGGTCCTATGCTTGCAAGTTGTGTCCTGCAAAATTCCAATTGAAACAATTTATTATGAAACATGTGTTAGATGTGCATGAGGATGGCCAATCACGGGTTCATCTTGCTTGTGTGCATTGTAGGTCGCGATTCAAAGATAAGAACATGTGGAAGAAACATATTCGTAATGGTGAATGTACTGTTTACATCGCCTGTGATTTATGTTCAGAGACGTTCCGCAATATGCAAGATTTCAATGAACATGCTCTGGCAATTCATGCTGGTAGTTTTGATCCTGATAATCAGAACAAATGTGTGGACGGTCGTCCGTCTGATTGCCCCATTTGTGGTAAAAAGAACAGTGGCTATCCAAATTTAGTTAAGCATTTGAAGATAATACACAATGAAGAGAAACCGCATTACTGTCAACATTGTGATTCAAAATATGAGCTAGCCACCGATCTAAACAAGCACATCTACATGGAACATTCTGATAAGGTTTTAGGAGTGCAGTCCTCGGAGCCAGACATGTCGCTTGTAAAAGAAGAGACTGAAGAATACCATTATTCATGTACAGAATGTAATGCCATATTCGAAACTGTCGATGCATGGACTGATCATCAGGTTGCAGAACATAATCAAATCGCGCATCATTGCGACCAATGTGAAAAGAAATTCCTAAGACCATCTGAGCTGGCAGAGCATAAAAATAGTCACTTACGCGTCAAGTTGTACCCGTGTAGTATTTGTTCCAATTCTTACAGTACTCCACAAAAGTTAGCGGAGCACGTTCAGCAGACTCACCCAGGAATGGGAATGGGCGCCGGAGAAACAGAATTCTTCTGCGATATTTGTGTGAGATCATTCAAAAGTCGTCAGGCCTTCTCGAACCATATGCGTATTCATGCTAAAGTGCCCTCTACTAAGAGAAAGTCTGGAGAGCTTAAAAGTTTTGCTCCACAAATTATTGGTAAACCAATTCGTCATTTCTCTATGGTACAACCTGGATTTAGTCCATTTAAACCCAATTGTAATGTACCAAATGCACCTTATTCGTGTGACATTTGTGGAAAAGGATTTATGCACAAGAAAAATATCTGGAAACACAAGAAGGTTCTGCATGCAGATATTTTGAATGAAAGAAATGACAGCGAGGAGAACACTATGCATGCGTCCACAGAAGATGATGAATATAATCCCGATGAAAATGGAGCGATTTTATCTACGCCACAGTTTAACAGCTTCAATTTTGCGAATCTTCCAACTAACATGCAGGCAGCGCCTTCCCAGGATGCAATGCCATATTCCTGTGACCTGTGCTATAAGCGATTCCCTCTAAAAACAAGCTTGTGGAAACATAAACGTGCAAAGCATGGAATTATTAACGCGAGCGCCACAGACAATTCGGTAGAAGTTAACAATAGTAGATCCAGTTGTACCATATGTAAAATTTCGTTCACCGACAAAAAATCATACTATAGGCACAGGAAAAATGTCCACAAGTCGACTGTTCAGATGTGTAAAATATGTGGCAAGCCATTGAATTCTACACTAGAGCTCTATGAACATCTAAAGTCTGCTCATGCACGGGAATTGTTAGGCTACAACGCTAGCCAAGGTCCTAGTAAAGCTCAAGATATTAGTCAAGAAATGGAACTCGAATACGAGCCAGAGCCGGAACCCGTAGACCCGAGTGCGGACTACCAAGCTCGTTACCCGTGCGACACGTGCGGGAAACAATTCGTTGGGTTGCTCGCCTTACAAAACCATCAATGTATCAATCAAGTTACACAACAACCTCAGACTTTCGATTGTGAAATTTGCCACAAGAGTTACACCTCCATCGCTGCACTCAAGAGTCACCGTGGATGGCACTTGCGCTCGCCCGACGGCAAGGCCGCCGCGAACAACAGCGGCTTGTGGATGCCGCAAAACAAAGTAACGAGTAAAGTCAGTAAATACGAAGTCGTCGACCCGTCTCAGTTAGCCCGCGTGTCGCACACTACTACCAGTCCGGCCTCCATTGCCAAGCGGAGGCTACCGCCAGAGGTGGAGGTGACCGTCGTCAATCCGAACAAAAAGATGCGATCGGACGACTCCATCGAAATGGACCAGCAGATTTCATCTAGCGGAGCGGACGACAGATACTGTAATATATGCGATCGCGAGTTTACGAAACGAGCAGCCTATCAGCGCCACATGGACGAGGTGCATCAGCCAAACTCGGTATTCTGTCCCGTCTGCGACAAGAGTTTCACGCGAAAGTCCACTTTAATCGTGCATATGAAAAAGCACTACGACACCGGTGAAGGTAGTTCGAGCATGACTCTTCAAGAGGACGATAATAATTCGTGCGAAGTGTGTGGGGAGCAATTCGAGAGCGCTAAAGCGTTGAATATGCACCGCGAGACGCAACACGGTGATGAGGAATCTAACGAGTCTGAAGATGACGGTTCGGTGCCGCTCCCGCAGCCCGGGGAGTTCACCTGCGGACAGTGCGGGGACGGGGTCGCCACTCCTCGCGATCTGATCGCTCACAGGACCATGCACTCGACCCCCACCAAGTTCTTCTGCAACATTTGCAAGGTCTACTTTGCCAGAGCGATCGACCTGTCTTCGCACACGCGAGCCAGGCATTCTGATAATGAGAAAGTTTTCTTCCCTTGTGCTATGTGCGACCGTTTCTATATGAATAAGAAGAGCTTACAACGGCACATCGAAATGGCTCACTGA
Protein Sequence: MNVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLVSKIKDCVSVQINENDELPTNVCRKCLDNVNNWHIFKTVCERTQNKLQSLIHKESSHLEEVHIKTEPNEGLSDGGYDDGIAIDGTYPDIENAGPSNKIQPEGPPILASLGLTPRSDKKYIDPRMDWQRVHAILGIIQDDEVIDSLQTVEECEVLHQSDHDSDMEGDLTGAVPEDCLDCKTGYMCKNKRVLSKNPILPLAENLAIVKKLTNLRKRNIKSVKSCQFPKNAWQLLVSDDLLELIVSSTNEKIIKNSNNKATDVSEIKTLIGILYYHGIMRPTHQKCSDLWDNDFGSICIRRTMKYDRFKFLLENLSFDSEGDDSCIMQLDIMKRIRKVFEIFALNCRTAKEIGNTAVIDELLLPVHGPCPFRYSIKKKEIKQGMKMVLVVDPTNFYVSNLDVITDPYFGNEDITTKLVQHLAGTGRTIYMDCWFSSETLINRLKKEYNLYSIAALHPSDTNIPPVFLSQYRKCKPFINGFIDEDLVLSSYIDSNSKVVNILTNDPNYYKRGHTSHTVVSAYKRNKSAIEVVDVLMHYYTTMQNTNDWTMSLFFMLLNIASVNAQVIWSSANSTNVVQRRMFIRDLAVSLMESDESSQLLEEFFIKRPRMSAIGSNSGTGIRQRKRCKICIKSTKKDRRTRQSCLRCGTFICREHTGVESEKDEEEEDEEMNEQQNLPTPPNVPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKITNKKSNRMQPKLRPNPFNPKARLMPNPISHKMQLIPNTPMAIKMMPQKTIIPPKPIPIKNIKQQQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEILNSGPESPETVISEPEIASFQVETILSEPDGFINHQDEGENDEEMQNQSQNYDTVDMDSDNEIEIARQHENQAEGDQIDNQNEMETEQTLNNEENENEEQNDTEIEPKEGEGQEDVNDENNENEKKVTENEEGNEEKEANQDEENQDDAFDPDLPPLAPVVEINEDMQTNSYNSEINEEEELELDDSADPNDVVDGDDKELDPDKQYVTKTQKEFIQKYRDIIEQINTKRCLCCNKEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFTHIGALLSHMRSNTCTDLWKIIYNENGISDDQVLEDEPKDVKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVHLACVHCRSRFKDKNMWKKHIRNGECTVYIACDLCSETFRNMQDFNEHALAIHAGSFDPDNQNKCVDGRPSDCPICGKKNSGYPNLVKHLKIIHNEEKPHYCQHCDSKYELATDLNKHIYMEHSDKVLGVQSSEPDMSLVKEETEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCEKKFLRPSELAEHKNSHLRVKLYPCSICSNSYSTPQKLAEHVQQTHPGMGMGAGETEFFCDICVRSFKSRQAFSNHMRIHAKVPSTKRKSGELKSFAPQIIGKPIRHFSMVQPGFSPFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADILNERNDSEENTMHASTEDDEYNPDENGAILSTPQFNSFNFANLPTNMQAAPSQDAMPYSCDLCYKRFPLKTSLWKHKRAKHGIINASATDNSVEVNNSRSSCTICKISFTDKKSYYRHRKNVHKSTVQMCKICGKPLNSTLELYEHLKSAHARELLGYNASQGPSKAQDISQEMELEYEPEPEPVDPSADYQARYPCDTCGKQFVGLLALQNHQCINQVTQQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTSKVSKYEVVDPSQLARVSHTTTSPASIAKRRLPPEVEVTVVNPNKKMRSDDSIEMDQQISSSGADDRYCNICDREFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYDTGEGSSSMTLQEDDNNSCEVCGEQFESAKALNMHRETQHGDEESNESEDDGSVPLPQPGEFTCGQCGDGVATPRDLIAHRTMHSTPTKFFCNICKVYFARAIDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -