Cbeh026489.1
Basic Information
- Insect
- Colias behrii
- Gene Symbol
- -
- Assembly
- GCA_029959075.1
- Location
- JARWMB010000025.1:5512574-5517567[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.00011 0.01 17.2 4.5 1 23 13 36 13 36 0.97 2 27 4.7e-05 0.0045 18.3 1.2 2 23 43 64 42 64 0.96 3 27 0.0022 0.21 13.0 1.8 1 23 70 92 70 92 0.98 4 27 0.026 2.5 9.6 2.5 1 23 132 154 132 154 0.95 5 27 0.16 15 7.2 0.0 3 22 183 202 181 204 0.87 6 27 7e-05 0.0067 17.7 0.4 2 23 225 247 224 247 0.95 7 27 0.00058 0.056 14.8 0.4 1 23 252 275 252 275 0.95 8 27 0.042 4 9.0 8.5 1 23 280 303 280 303 0.97 9 27 0.00077 0.074 14.5 1.4 2 23 306 328 306 328 0.96 10 27 2.3 2.2e+02 3.5 2.0 2 22 335 355 334 355 0.93 11 27 0.015 1.4 10.4 0.5 1 23 407 430 407 430 0.95 12 27 0.71 69 5.1 0.2 3 23 504 525 502 525 0.93 13 27 7e-05 0.0067 17.7 0.2 3 23 532 553 531 553 0.94 14 27 0.17 17 7.1 6.1 2 23 558 580 557 580 0.94 15 27 0.0043 0.42 12.1 2.1 1 23 585 608 585 608 0.97 16 27 1.3e-05 0.0013 20.0 5.0 1 23 612 635 612 635 0.97 17 27 6.7e-05 0.0064 17.8 0.2 2 23 642 663 641 663 0.96 18 27 0.027 2.6 9.6 0.5 1 23 720 743 720 743 0.97 19 27 0.0017 0.16 13.4 0.1 3 23 775 796 773 796 0.94 20 27 0.00028 0.027 15.8 0.4 2 23 819 841 818 841 0.95 21 27 0.01 0.99 10.9 1.3 1 23 846 869 846 869 0.95 22 27 0.2 19 6.9 0.5 1 23 874 897 874 897 0.91 23 27 0.011 1.1 10.8 0.2 2 23 903 925 902 925 0.91 24 27 0.036 3.4 9.2 0.1 2 23 933 955 932 955 0.94 25 27 0.032 3.1 9.4 0.1 2 23 962 983 961 983 0.95 26 27 1.7e-05 0.0016 19.7 0.6 1 23 989 1011 989 1011 0.93 27 27 0.013 1.3 10.6 5.3 1 23 1017 1040 1017 1040 0.96
Sequence Information
- Coding Sequence
- ATGCGAAGACATAAGCTAAAAGTTCACAATTTGGGGCATCAATGCTCGCACTGTGGCAAACTTTTCACGTCCAACTCGTACCTCGACGATCACACTCGACGAATACACTTAAAAGAGAAAAACTTGCAATGCCCCGTGTGTCCCAAGAGATTTTTCGATAAGCGATTTCTGAAAACGCACATGGTCAAACACTACGGCGAGAGAAAGTTTGAGTGCGACACGTGTGGCAAGAAATTTTTGTGGAAAAAGAATCTCAGATCGCACATGACCACGCATATGAAACATGAAAACGCGGAAGGGCCATGCGAGCACTTTACCTCAGAGAGACGCAGgaaaaatatgcaaatactcTTCAACAACACTACACTAATGCCTTTCAAATGGAAAGGCCGGTTCTTGTGTTTCTATTGCGCGAAAGATTACACGGTATACTCTGAATTCAAAAAACACACCAAATCGCACGGTCTCTGCACCACGAAGGACTAttctttgaaaataattaaaggCAGTCACATTGAGATCAAATTGGACATTTCGGATATAAATTGCGAGATTTGCAATGAACCGTTCAATAGCTTTGACGAAATTGTCAATCATTTGGTTGGAAAGCACGACATGGACTATGATAAAATGATTGATATCCCGTTCACTCAATACAGATTAGTCGATATGAAGTGTCAGTATTGTGGCAAGGAGTTCTCTTATTTTGGATATCTCATCAGTCATTTGAAGCTTGCTCATCCACAGAATAATTTCATATGCGACGATTGTGGTGCGACGTTCAATATGAAACGAGATTTGGCTGCTCATTTTAAGTATTATCACAAACAGGGCGGGTATCCCTGCGAGCACTGTTCAGAAGTTTGTCATTCGCACTACGATCTAAAGAAACATCAAAACAGTTATCACTTTCGAAGGTGTACGGTGTGTGACTCGAGCTTTGCGTCGTACCATTTATTGCAGAAACATATTCAGAACGAACACGCTAAAGTTAAGAACAATAAATGCCCATATTGCGCGAAGAAGTGCCATTCTTCGTTAGGcgtaaaattacatattaaaaCGTGCAAGCTAAAAGTGCCCTTAAAACCTCAAGTGCCCCAACCGTCAGAAAACTTTATCGAGCCGAAGAAAAAGCAAAACATATTGCAAATAAGACAAAATATCCTCAGTGTGTTGAACATGTCCACTGTGGTCCCGTTTAAATTCTTCGGCAAGTTTTCGTGTTTCTATTGCTCAATAAAGTTTGCTGAGTTCGATGATCTCAAATCTCATACAGCTGTCGAGCATCCTGTATGCGATATAAcctcaaaatgtatgaagaagtGTAAAGGTGAAAGGACGACGGTTAAAGTTGATATATCGGCCCTATCGTGTAAGCTTTGCTGCCAAACAATGGATGACCTAGACGTTTTGATCGACCATTTGATATCAAAGCATAACGCGCCATACGATAAGACAATGAAGAATTGCTTTGAACCGTTTCGGATAGTAAAAGACAACATCGCATGTATGTCTTGCCCGAGCGTGTTTAGATATTTTGCAACATTGTTACGTCACAGTAACTCAGAGCATAGCAATAACAGTCGTATTTGCGACTTTTGCGGACGAAGTTTCAAGAACGTGACTAATTTAAACGTGCATATTTCATACGCACATACAGGATCTTCCGAGTGTGATGTTTGCGGAAACCATTATAAAAACCAGTGGTGTCTAAACAGGCATAAGGCGAAATGCCACAACGCGAAAGATTTCAAATGCCCAAACTGCCCAGAACTGTTCCAATCCCAATACCATAGGCAGAAGCATTTGATAAAAGTCCACGATATAGGACACAAATGCACGTACTGCGGGCGGATGTTTACACGGAATTCCTTCATGAAGGATCACATACGAAGGACTCATTTGAAAGAGAAGAATGTAGAATGTTCGATTTGTGGGGAGAAATTCTTTGATAACTATTTGCTAAGGATGCACATGGTGAAACACGAAGGGGTTAGGAAGTTTAGTTGTGACGTTTGCTGTCCAAATACCGACCCAACGGGGGACAGACAAAAGAAAAAGGAAATGGTGCGAAAATTATTAATCAAAAGGCGTAACATTGAGTATGTCTTACAATATAGTAACGCAACCCCATTCCTATATTACAAGGCTAGATATAGATGCTTCTATTGTACAGAACCCATGAAAGACCCCGACATGCTTCGAGAACATACCTTAAAAATGCATCAGTTCGCTAATCTGGAGCTAGTGATACACGATCGaacgaaaaataatagaaaTTGGGACGCCGCTGTTAAAATTGACATTTGTAATCTCGCCTGCAAACTATGCCCTCAGATTTTTAATGATTTGGAACAGCTTATACACCATTTAATCATCGCACATGACGCAGAATACGACATGAGCGTACCAAACTGTCTTCTGCCGTTCAGATTGAAAAAAGACCACCTCACCTGCCCGATTTGTGATACAAAATTCGTATCCTTCGAATATCTTTTGCGGCATGCCAATAAATATCACTTATCCCACGATTATATTTGCGACGTCTGTGGTACGAGCTTTCAAGGTGTAAACCATCTGCGAATGCACAATAGGTACTATCACAAGGAAGGTGGATACACGTGTGATTACTGCGGTATTAAACTCGAAACGCTGTCGAAGAAAATGTTACACGAAAAGAATATACATCTAGTCAACCTCCTAACTTGCCCATACTGTCCAGAGATATTCAAGAGTCCGTACTTCAAAAAATTGCACTTAGCCAATGTTCATGGTTTAGCGGATTTGAAGATAAAATGCCCCTACTGTCCAAAGATTTTCCTGCAAGAAGGTATTATGTCAAGACACATGAGACGAGTTCACTTACGAGAGAGAAACGTTGAATGCCCTATATGTGGGGATAAGTTCTTTGGACAATATGACGTGAAGTTACACATGGTTAAACATAATGGGGATAAAAAGTTTATATGCTCGGTTTGCGGCAAAATGTTCGGGAAACGGAGTAACTTAAATAAGCATGCTTATTTGCATACAGGGAGGAAGGATTATAACTGCTGTTTATGTGGGAAGGAATTTGCCTATAGATCGAATTTGAGGTTCCACTATAAGAAGAAACATCCACAATATATCGAGGAAGAAAGTCCAGTGATTGATGATAATGTGTTCGTGAATATTGAGTtgggaacggattttgatgttgTTGAAGAGACTGTGTAA
- Protein Sequence
- MRRHKLKVHNLGHQCSHCGKLFTSNSYLDDHTRRIHLKEKNLQCPVCPKRFFDKRFLKTHMVKHYGERKFECDTCGKKFLWKKNLRSHMTTHMKHENAEGPCEHFTSERRRKNMQILFNNTTLMPFKWKGRFLCFYCAKDYTVYSEFKKHTKSHGLCTTKDYSLKIIKGSHIEIKLDISDINCEICNEPFNSFDEIVNHLVGKHDMDYDKMIDIPFTQYRLVDMKCQYCGKEFSYFGYLISHLKLAHPQNNFICDDCGATFNMKRDLAAHFKYYHKQGGYPCEHCSEVCHSHYDLKKHQNSYHFRRCTVCDSSFASYHLLQKHIQNEHAKVKNNKCPYCAKKCHSSLGVKLHIKTCKLKVPLKPQVPQPSENFIEPKKKQNILQIRQNILSVLNMSTVVPFKFFGKFSCFYCSIKFAEFDDLKSHTAVEHPVCDITSKCMKKCKGERTTVKVDISALSCKLCCQTMDDLDVLIDHLISKHNAPYDKTMKNCFEPFRIVKDNIACMSCPSVFRYFATLLRHSNSEHSNNSRICDFCGRSFKNVTNLNVHISYAHTGSSECDVCGNHYKNQWCLNRHKAKCHNAKDFKCPNCPELFQSQYHRQKHLIKVHDIGHKCTYCGRMFTRNSFMKDHIRRTHLKEKNVECSICGEKFFDNYLLRMHMVKHEGVRKFSCDVCCPNTDPTGDRQKKKEMVRKLLIKRRNIEYVLQYSNATPFLYYKARYRCFYCTEPMKDPDMLREHTLKMHQFANLELVIHDRTKNNRNWDAAVKIDICNLACKLCPQIFNDLEQLIHHLIIAHDAEYDMSVPNCLLPFRLKKDHLTCPICDTKFVSFEYLLRHANKYHLSHDYICDVCGTSFQGVNHLRMHNRYYHKEGGYTCDYCGIKLETLSKKMLHEKNIHLVNLLTCPYCPEIFKSPYFKKLHLANVHGLADLKIKCPYCPKIFLQEGIMSRHMRRVHLRERNVECPICGDKFFGQYDVKLHMVKHNGDKKFICSVCGKMFGKRSNLNKHAYLHTGRKDYNCCLCGKEFAYRSNLRFHYKKKHPQYIEEESPVIDDNVFVNIELGTDFDVVEETV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -