Cbeh019013.2


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Colias behrii
Gene Symbol
-
Assembly
GCA_029959075.1
Location
JARWMB010000017.1:6941497-6956088[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00011 0.01 17.2 0.1 3 23 130 150 129 150 0.97
2 18 9.7e-07 9.3e-05 23.6 1.2 1 23 156 178 156 178 0.99
3 18 6e-06 0.00058 21.1 2.7 1 23 184 206 184 206 0.99
4 18 4e-06 0.00038 21.7 2.6 1 23 221 243 221 243 0.98
5 18 5.5e-05 0.0053 18.1 3.1 1 23 258 280 258 280 0.98
6 18 3.8e-07 3.7e-05 24.9 1.5 1 23 295 317 295 317 0.99
7 18 0.00017 0.016 16.5 2.8 1 23 323 345 323 345 0.98
8 18 0.0001 0.01 17.2 0.0 1 23 381 403 381 403 0.99
9 18 5.8e-06 0.00056 21.1 2.0 1 23 409 431 409 431 0.99
10 18 0.039 3.7 9.1 1.8 1 23 438 460 438 460 0.98
11 18 6.5e-07 6.2e-05 24.1 2.3 1 23 466 488 466 488 0.99
12 18 0.045 4.3 8.9 1.8 1 23 495 517 495 517 0.98
13 18 2.6e-06 0.00025 22.2 1.5 1 23 523 545 523 545 0.99
14 18 0.0005 0.048 15.0 0.7 1 23 552 574 552 574 0.99
15 18 2.9e-06 0.00028 22.1 1.9 1 23 580 602 580 602 0.98
16 18 0.0021 0.21 13.1 0.3 1 20 608 627 608 630 0.93
17 18 6.5e-05 0.0062 17.8 1.2 2 23 637 658 636 658 0.97
18 18 3.8e-06 0.00036 21.7 1.4 1 23 664 687 664 687 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAGATTAAAGCTGAACCTATGAGTTTTTACACATCACACTCCCACGTGAACACAGGACCCCCGACAATAGTCCGTTCCGATTCAAACCATGGCATAATTAACATGAACCAACATCACCCCCAAGAGGACTCGAAGGATAGCCTCATAGTACAACACCAAGTACACCAACAGGAGCTGCTGGATCAGCACCAACAAGACATGCAACAGGATGATGATGTAGATAACTTAAGTTTCAAAGGTATGGACGATGAGGGCGTTGAAATGGATATGGATGGGCGCCAATGCTCTCAGGGTATGGGCGTTGATATGGGTTCCGTACAGACTAAGATGGAGGTCACAAATGGCCAAGGAGTTCCAAGATCCAAACCTCAAGCTTGCaaaGTGTGTGGCAAAGTTTTATCATCTGCATCTTCATATTATGTACACATGAAACTTCACTCGGGCAACAAACCATTTCAATGCACGGTATGCGACGCGGCGTTCTGCCGCAAGCCGTACCTGGAGGTGCACATGCGCACGCACACGGGCGAGCGGCCGTTCCAGTGCGACCTCTGCCTCAAGCGCTTCACGCAGAAGTCGAGCCTCAACACGCACAAACGCGTCCACACCGATGAGCACATTCGCGCATTGATGGTGAAGGAGCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGCTTCACGCAGAGTTCCAGCCTCAACCGGCACAAGAAAATACACACGGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACACGGAAAGATACACACGGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGTACTCATAAACGTATCCATACCGGCGAGCGGCCCTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGATTGGCTGGGGGCGAGCGGTCAAGGCACACGTGCCGAAAAGCGTCGGCGACGTGCGTTACTCGCTTTTGTGTGTGCACTGGGCGCAGTGCAAGGGCGCCCTTACTCGTGCGGGCTTTGCCCGGCGGCGTTCGCCCGCCGCCCCTACCTGGACATTCACATGCGCACACATACAGGCGAGCGGCCCTATCAGTGCGACGCCTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATCCATAGACGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCCGCGGCCTTCACCTGCAAGCAATACCTGGAGATTCACACGCGGACGCACACGGGCGAGCGGCCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCGAGTCTGAACATACACAAGCGGACGCACTCAGTGCAGGGCCGGCCCTTCCAGTGCCTGCAGTGCCCCGCCGCCTTCACCTGCAAGCAGTACCTCGAGATACACAACCGCACGCACACGGGCGAGCGGCCATACCAGTGCGACGTTTGCCTCAAGAGATTCGCGCAAAAATCTACACTTAATATACACAAAAGAACGCACACGGTGCAAGGGCGGCCGTATCAGTGTATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAAATACACATGCGCACGCACACAGGCGAGCGACCCTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCCACCCTCAACATTCACAAGCGCATTCATACCGGGGAACGCCCCTACGCTTGTGATATTTGTCAAAAAAGATTTGCCGTGAAGAGTTACGTTACGGCTCATAGATGGTCGCACGTGGCGGACAAGCCGCTGAGCTGCGAGCGCTGCTCGATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCTCGCACGCGGCGGGCCCGTGCTACGAGTGCAGCGTGTGCGGCCGGACCTTCGTGCGCGACAGCTATCTCATACGCCACCACAACCGCGTGCACCGCGACAACCACAGCAACGTGTCGGCGAACAGCGGCGTCATCAGCAACGTCAACAGCGGCAACAATTCCAGCTACGACTCGCCCGGCGTGTGCGATCTCAGCTTCGTGCCAATGGTGAACCGCTACCTAACATCGCAGGGCACGCAGGTGTCGCTCAACGACACGCAAACCAAGATGGCCGCCATGTCGCCGCAGTCCATTGCCTCTATTTCGTCCCCCCCTCCGTCGCACACCCCCACTCCGCAGCCGCAGCAGATGTCTTCGGGAATGCGACTCGCGGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHSHVNTGPPTIVRSDSNHGIINMNQHHPQEDSKDSLIVQHQVHQQELLDQHQQDMQQDDDVDNLSFKGMDDEGVEMDMDGRQCSQGMGVDMGSVQTKMEVTNGQGVPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHIRALMVKERPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTDWLGASGQGTRAEKRRRRALLAFVCALGAVQGRPYSCGLCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHRRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLSCERCSMTFTSKSQFALHIRSHAAGPCYECSVCGRTFVRDSYLIRHHNRVHRDNHSNVSANSGVISNVNSGNNSSYDSPGVCDLSFVPMVNRYLTSQGTQVSLNDTQTKMAAMSPQSIASISSPPPSHTPTPQPQQMSSGMRLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824939;
90% Identity
iTF_01508242;
80% Identity
-