Cbeh022713.1
Basic Information
- Insect
- Colias behrii
- Gene Symbol
- -
- Assembly
- GCA_029959075.1
- Location
- JARWMB010000021.1:2161597-2162235[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7e-11 2.2e-08 34.6 0.1 2 41 16 56 15 59 0.86
Sequence Information
- Coding Sequence
- ATGGTTAGTAACTATAAAAGAAAGACGGACAAAGCCTCCTACTCTAAAGAGAAGCTACAAGCAGCTGTAAGAGCGGTAAAAAATGGGGAGCTAAGTGGCTACAAGGCTtcaaaagaatataatattcctAGAATGACCATAATGGATCATGTAAACAATAGGAGAACAAAATCAAATTCTTTAGGAAGAAACACGGCATTACCGTTGCCTGTAGAAAAAATATTAGCTTCCTGTCTTCATCTTATGGAAAAGCATGGCTTTGGATTAACTAAAACAGAAATGCTGGAAATGGTGGCAGAATTTGTGAAGAAAAACAAAATATCTACACCATTTAAAAACGGAACACCTGGTAATTCGTGGTTTACTGCATTCAAAAAGCGACATCATTTATCTGTTAAAAAACCTCAAGCGGTGGAGTACGCGAGAAAGAAAGCCATAAACCCATTTATCGTATACCCCTATTTCAATTTACTTGACAAAACATTACATGACTTGAATCTTTTAGAAAAACCGTCCGCAATTTGGAATTTAGACGAGACAAGTTTCTCCAAAGACCCAGAAAAAACTAAAATCGTTGGACTTAAAGGACACGCGGCTACTAGAGTCATTTCATCGCCCGGAATCGCCCGGAAAGGATAA
- Protein Sequence
- MVSNYKRKTDKASYSKEKLQAAVRAVKNGELSGYKASKEYNIPRMTIMDHVNNRRTKSNSLGRNTALPLPVEKILASCLHLMEKHGFGLTKTEMLEMVAEFVKKNKISTPFKNGTPGNSWFTAFKKRHHLSVKKPQAVEYARKKAINPFIVYPYFNLLDKTLHDLNLLEKPSAIWNLDETSFSKDPEKTKIVGLKGHAATRVISSPGIARKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00325313; iTF_01569242;
- 90% Identity
- iTF_01569242;
- 80% Identity
- -