Cbeh017074.1
Basic Information
- Insect
- Colias behrii
- Gene Symbol
- clz9_1
- Assembly
- GCA_029959075.1
- Location
- JARWMB010000015.1:7118583-7123264[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.1e-08 2.3e-05 24.9 0.0 3 36 27 61 25 68 0.91 2 2 0.0033 1.1 10.0 0.1 17 40 737 760 734 763 0.92
Sequence Information
- Coding Sequence
- ATGCCACGAATATATATTAGAAAATTCAGGAACACTAGGAATGGAAAGTCCTTCCTACCTTACACTAATTACAGTTCTGAAAATTTACAGAAAGCAATTCGAGACGTAAAAAGTAAGACTTTGACGCTAGGAGAAGCATCATCTAAATATCAAATACCTAAAACAACGTTATCAAGAAAATGTAGAAACCTTAATTGCTCACAAGAAAAAGCAGGACGTCCTACCCTCTTTTCACCAGAAGAAGAGAAAGCCTTCATTAAACACATAGTAAATTTGGCAGACTGGGGATTCCCATTTGATCTTACTGATCTTCGTATTTTCGCGAAGAGGTACTTAAATAAACTCGGAAAAACAATATACGGATTACCTGAAAATCTGCCTGGTTCAGAATGGGCTCGAAACTTTTTAAGGCGTCATAAAGATTTGCTTTCGAACCGTATGGCTTCCAATATATCCACCGATAGAGCAAAGGTATCAGCATCGACAATAGACTCATTTTTTGAGTACTTTGCACCAACAATCGATGGTGTTACTCCTGATCGAATCATAAATTATGACGAAACTAATTTAACCGACGACCCAggaaacaaaaaatacatttataaacgtGGTGTAAAATACCCAGAACGAGTAACAAATACATCGAAAACGGCTGTTTCCCTCATGTTTGCTGCCACAGCCGAAGGTCAGATCTTACCGGTTTACGTGGTGTACAAAGCTGAACACTTATGGGATACCTGGGCAGAAGGAGGTCCTTCAGACACAatatacaatcgctctaaaagCGGATGGTTCGACTCGGTTTGTTTCGAGAATTGGTTTGAAAAAGTGATTGTTCCATACGCTAAAACAAAGCCTGGACGTAAAATTGTCATAGGAGACAATCTCTCTTCACACTTTTCTGAAAACGTATTAAAAAAGTGTGAAAAGCTAAACATTTCATTTGTGTGCTTACCCCCCAAATCCACGCACCTTCTGCAGCCGTTAGACGTTGCCTTGTATGGACCTTTAAAACATTATTGGCGAACCATATTGAGTGAGTGGAAAAAAGTAGAAGGGCGCAAACATAAGACCCTAGTAAAAGATGTTTTTCCAAAACTGCTGTCCAAACTTATGAACAAACTTATGGAAAACAACACGGGGGGAAAGAACGTCATTGCAGGTTTTAACAAATGTGGGCTTTATCCAATCAACCCGGAACGACCAAAGTCACGGCTGCCACACAATCATGACATACTACCCGAGGAAATTGAAACAGCTACTACTTCAGTTGTCATAGAACATCTAAAAGAAATGCGGGGGCTATCGGCTTCAGATGAGCCCAGAAGACGTAAAAAACGATGTAATGTTCCAGCAGGCCAAGGCATCACAGCACGAGACATTGAGCAAATAAAACctaaaaaatcaaataaaatgacAGATAATAAGTTTATCAATCGTGAAGTTGAAGTGTCTTCATCTGATTCGTCTGAAATAATTGATATTTCAACAATTGATATTCTAGAGCCAGAACCAGACAAgacaacaaataaaacaaactcAATTAGCATTCCAGAAAATCAAGGGATTGCCCAATATTGTAATAACAGAGACATAGAGACAACAACGACCAACGATACTCAAGAAAACCGAAATACGAGTGAATTTTATGACAGCAGAAAAGCAAAAGTTACTACCAAAGAGAAATTACCAGCAGAAAGCACTGAAAAGATCATACCGAATCAAGAGACAATATTATCAGAAGAAGATATCAAGACCAATTTTAACAACCATGATTCAGAAAGTAAAAACACAGAACAAGGAAAAGAATATGAATTGAACGACCACGTAATTGTAAGATACGTCATCAAAAAGAATTggaaatattatataggtataatagAAAACATAGACATGGAAAATGAAGAACCTTATAGTATTCGATTTTATAAAACAGCTAAAAAACCGTCGTTACGGTTCCTTTCGACACGAAAGCTTGACAGGGACATAGTTCCCTCTATATGTATTGTCAAGAAAGTCAATTTGATACAAAACCCAAATAATTCAAAGGAGTTATTTCTGTCCGTGGCTGACGATGATGTCGTAGACTTATTTACAGTAAATAACGCACACCATGAAGGTCGTATTCCTGGAATTAGAAATCGAGTAGGAAGGCCTAGATCAGTctatgatcgtctaatattgaCAGAAGTAGAAGAAGATCCTTCAACTAGTACTCGCCGTATTGCTAGACGCACTGGTGTACCAAGAAGTACAGTGCATCGCATATTGAAGAGAAGTAATTTACACCCATATCATGTACAATGA
- Protein Sequence
- MPRIYIRKFRNTRNGKSFLPYTNYSSENLQKAIRDVKSKTLTLGEASSKYQIPKTTLSRKCRNLNCSQEKAGRPTLFSPEEEKAFIKHIVNLADWGFPFDLTDLRIFAKRYLNKLGKTIYGLPENLPGSEWARNFLRRHKDLLSNRMASNISTDRAKVSASTIDSFFEYFAPTIDGVTPDRIINYDETNLTDDPGNKKYIYKRGVKYPERVTNTSKTAVSLMFAATAEGQILPVYVVYKAEHLWDTWAEGGPSDTIYNRSKSGWFDSVCFENWFEKVIVPYAKTKPGRKIVIGDNLSSHFSENVLKKCEKLNISFVCLPPKSTHLLQPLDVALYGPLKHYWRTILSEWKKVEGRKHKTLVKDVFPKLLSKLMNKLMENNTGGKNVIAGFNKCGLYPINPERPKSRLPHNHDILPEEIETATTSVVIEHLKEMRGLSASDEPRRRKKRCNVPAGQGITARDIEQIKPKKSNKMTDNKFINREVEVSSSDSSEIIDISTIDILEPEPDKTTNKTNSISIPENQGIAQYCNNRDIETTTTNDTQENRNTSEFYDSRKAKVTTKEKLPAESTEKIIPNQETILSEEDIKTNFNNHDSESKNTEQGKEYELNDHVIVRYVIKKNWKYYIGIIENIDMENEEPYSIRFYKTAKKPSLRFLSTRKLDRDIVPSICIVKKVNLIQNPNNSKELFLSVADDDVVDLFTVNNAHHEGRIPGIRNRVGRPRSVYDRLILTEVEEDPSTSTRRIARRTGVPRSTVHRILKRSNLHPYHVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -