Basic Information

Insect
Colias behrii
Gene Symbol
-
Assembly
GCA_029959075.1
Location
JARWMB010000022.1:2474483-2476206[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 5.4e-14 1.7e-11 44.5 0.2 1 45 14 58 14 58 0.96
2 2 2.4 7.6e+02 0.9 0.0 27 42 156 172 156 174 0.83

Sequence Information

Coding Sequence
ATGCCACCAACGAATCGGAAGAAAAGAGGAGAGTCTTGGACAGAAGACACAATGAGGGCTGCAATCAATGCTATACAAAGGGGCCAACTCACACAGAGAGCTGCCTCTGAAAGGTACAATATACCTCGTAGGACTCTTAGAGATCACTTAAAAAATGGAAATGCTAAAAAACGTTTTGGAAGAAAACCTGTTTTTTCTGAGAAGCAAGAAGCAGACTTAGTCGCAAGAATAATAAGAAATCGAGAACATCCTGAGAGGCTTTACAATATGGATGAGAAAGGTTGTCGTATAACAGTACATAACCAGCACACCGTTTTAGCTGAAAAGGGTAGTAAGAGAGTTCACCTCTTTGCTCCCGAACACGCTGAAAACGTCACGATAGCAATGTGTGTAAATGCCGTCGGTACGGCAATCCCACCGATGATACTGTTCAAAGGACAAAGGAAAAGACCTGACTTAAAGAAAAATGTCCCAAATGGAACATTAGTAAAAATGGCTCCAAAGGGGAGCATGACGTCAGACTTGTTTGTCAAATTCATTAAGCACCTAGCAAAATTGAAGGTTGTTAAATGTTTGCTGATCTTCGATGGTGCTAAATGTCACCTATCAATAGAAGCACTTGATGAAGCTGAGAAAAATGATATAGTTTTATATTGCCTCCCCTCTAACACCACACACGAACTACAACCGTTGGATAAGTCTGTAAACAAGTCTTTCGAACACCACTGGGATGAAGCTGTCTTAAACTTTTTGTACGAAAACCCCAATGAAAGATTAACAAAGGCCACATTTAACCAATTATTTACGAAAGTCTGGTACAAGTGTATGACATATAATAATATCGTTAATGGTTTTAAAGCAACAGGTCTCTTTCCTTTCAATCCGGAGGCAATTCCTGAAGAGGCATACGCCCCATCGGTTTTGACGGAAATTCCGTACCCTCAGATCGAAGATAACTCTGTGCAGAACGCAGACTGTATTGGTCTTACCAAAGAAgataaagagtttgtttgctcaGACTGTTAA
Protein Sequence
MPPTNRKKRGESWTEDTMRAAINAIQRGQLTQRAASERYNIPRRTLRDHLKNGNAKKRFGRKPVFSEKQEADLVARIIRNREHPERLYNMDEKGCRITVHNQHTVLAEKGSKRVHLFAPEHAENVTIAMCVNAVGTAIPPMILFKGQRKRPDLKKNVPNGTLVKMAPKGSMTSDLFVKFIKHLAKLKVVKCLLIFDGAKCHLSIEALDEAEKNDIVLYCLPSNTTHELQPLDKSVNKSFEHHWDEAVLNFLYENPNERLTKATFNQLFTKVWYKCMTYNNIVNGFKATGLFPFNPEAIPEEAYAPSVLTEIPYPQIEDNSVQNADCIGLTKEDKEFVCSDC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-