Basic Information

Insect: Coleophora flavipennella
Gene Symbol: -
Assembly: GCA_947284805.1
Location: OX369287.1:682855-707585[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.16 15 7.6 0.5 2 23 337 358 336 358 0.95

2 7 0.011 1.1 11.3 2.4 3 23 605 626 604 626 0.97

3 7 0.0049 0.46 12.4 2.8 1 23 629 652 629 652 0.96

4 7 2.4e-05 0.0023 19.7 0.0 1 23 658 681 658 681 0.94

5 7 0.0069 0.65 11.9 0.4 2 23 694 716 693 716 0.94

6 7 0.00023 0.022 16.6 1.1 2 23 723 744 723 744 0.97

7 7 2.3e-06 0.00021 22.9 0.2 1 23 750 772 750 772 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.16	15	7.6	0.5	2	23	337	358	336	358	0.95
2	7	0.011	1.1	11.3	2.4	3	23	605	626	604	626	0.97
3	7	0.0049	0.46	12.4	2.8	1	23	629	652	629	652	0.96
4	7	2.4e-05	0.0023	19.7	0.0	1	23	658	681	658	681	0.94
5	7	0.0069	0.65	11.9	0.4	2	23	694	716	693	716	0.94
6	7	0.00023	0.022	16.6	1.1	2	23	723	744	723	744	0.97
7	7	2.3e-06	0.00021	22.9	0.2	1	23	750	772	750	772	0.98

Sequence Information

Coding Sequence: ATGGATGATGAGATTAACAACATTACTGAATGTTTGTGCAGAATTTGTCTAGGAGATGGAGCTTCGATTCCAATCTTTGAAGACTCCAGGGATGAAGATAGCTCGAATTCCTCCGTCCAGAACAAACTCTCTCTTTGTCTCAACGATGAGTTGGAAGATGTGGCAGGGCATCCTCGATACATATGTGATCATTGTCAGGAAACACTGGACACAGTGTTTGACTTCATAAACAAATACAAGGAAACATGCAGGATACTACAGGAAGGAATAATAGTTGTTGTGAAGCAAGAAAATGATGAAAATTATGAAGATAATGATAGGGTTTTCTATTACCCTGCATTTGCAACTTTTGAACAAAACTCAGGAGACTTTACATATTGTGAAATTTTCGAACAAAACCCTGAAGACTTTACATTTGAAACTTTAGAAAAAAACCCTTTGGACTTAACATTTGAAACTTTTGAACAAAACCCTGGAGATGTAACATTTGAAACTTTTGAACCAAATCAAAAGAAAAAAAAGATAGAATTTGATAAGAATAAAATTTATAGTAAGAAAACAAATTTGAAGACTAGTGAAAATAAGAAACTCAAAAAGGGAACCCCGATAAATAAAGATTCTAAAGGAAAGCCAGATATATCAGCAAAAGCTAAACCCTTTTGTAAATTAAAAACTTATGAAAAAAATGAAATTAGTAAAAAGGAACAACATATTACTAACATACGAAACAACTGGTTTACATACAAAACAAACAGAGTAGCATCGTCACTGTTGGAAGGGGAATTTGTTTGGAATGGAGAAGATTGGCGTCCAAGAATAGGCGTATCAAAGGAGTTGGTCTACAAGAAAGATCCAGTAGAAGGTGATAAGATAGATCTACAGAATCAGCCTAAAGCTGGAAAGAGGCCTCCAGAACCTGTTCTTTGTGGATGTTGCGGAAAGAAATTCTTTAGCCTTAATAAACTCAGATTTCATGAAAAAACTATGCGTATACGTTGTGTAATGGTAAGATGTCCAGTTTGTAATGTGCATATTTCATCTCAAGGCTTGAATAAACACATAAAAACTCTGCACCCTAATGTAAAAAAGAAAATGAATAGGAAGAAAACTCATTTTAAGAATGAATCTTTGTGCAGAATTTGTTTAGGAGAGGGAGCTTCGATTCCAATCTTTGACGACAGTAAGAGTGAAGATGGCTTAAATTCTACCATCCAGAGTAAACTTTCCCTGTGCCTCAATGACAAGTTTGAAGATGTGGATGGATATCCTCGCTACATATGTGATTGTTGCCAGGAGACACTGAACACTTTCATCGACTTTATAAACAAATACAAGGAAACATGTAGCAAATTACAGGAAAGACTAAAAGTGTGCAGCCCTAATAAAAACAACCCAACCCTAGATATTGTAAAGCAGGAAAACATTGATAATGAAGATTATGAAGACATTGTTTACCTTGATGATAATTCATTTGAAGGTTTTGAATCAAAACCAATGAAAAAAGACATTAAAATAGATTTTGAAGATGGGGCACATTTCATAGAAAAAATTAAACCTATGTGCAAATTAAAAACTAGGGAAAAGAATAAAATAAAGAAAGGGTCCTCTATAGTAATGAGAACATGTAAAAAATATCAGATTTCTGAATGCAAAACTATTAGAAAAACATCATCACAGGATGCAGACGATTGGCGTCCTGTTAGGCAATCAAACAAAGTTGCAGCAAAGGAATTTGTAAAAAAGAAATCTCTAGTACAAAATAAAAAGAAGCAAAGGCCTACAGTTGAAAAGAAGCCTCAAGAGCATGTCCTGTGTAAATCTTGTGGAGAAGTGTTCAGGAGTTGTGAAAAACTGGAGTTACATGAGAAAAGAAAGCATATTAAACATATATGCCCAACATGTAATGTGACACTTTCCTCACTGTCACACTTGGACAGACATGTCAAGAGAAAACACTCCGATGTCAAAGACTTCATTTGTGATGAGTGTGGAAAGGGATTTGCATTTCAAGGAGACTTGACTGCACATTTGCAAGGAGTACATGCAAAAATACGTCGGAAACAAGTTCACAAGAAGCTACCATGCAAATTATGTAAAAAAACCTTTGTGACAAAAACAATATTACTTATCCATGAAAGATCAGCACATACAGGTGAGCGACCGGCAGTATGTACAGTTTGCAACGCAAGTTTCTTCCACGAGGACTATTTAAAGGAGCACATGCGTCTGCACACGGGCGAGCGTCCGTTCGAGTGTCCGGTGTGCGGGCGCGGCTACGCGCAGCGCGGCAACATGAAGAGCCACATGCGGAACCATCGCATATCGCAGCTGGACCAGGCGATGTTAGACAAAATCAAACCTTCCTGGTATAAGTTCATGAAACCGTGA
Protein Sequence: MDDEINNITECLCRICLGDGASIPIFEDSRDEDSSNSSVQNKLSLCLNDELEDVAGHPRYICDHCQETLDTVFDFINKYKETCRILQEGIIVVVKQENDENYEDNDRVFYYPAFATFEQNSGDFTYCEIFEQNPEDFTFETLEKNPLDLTFETFEQNPGDVTFETFEPNQKKKKIEFDKNKIYSKKTNLKTSENKKLKKGTPINKDSKGKPDISAKAKPFCKLKTYEKNEISKKEQHITNIRNNWFTYKTNRVASSLLEGEFVWNGEDWRPRIGVSKELVYKKDPVEGDKIDLQNQPKAGKRPPEPVLCGCCGKKFFSLNKLRFHEKTMRIRCVMVRCPVCNVHISSQGLNKHIKTLHPNVKKKMNRKKTHFKNESLCRICLGEGASIPIFDDSKSEDGLNSTIQSKLSLCLNDKFEDVDGYPRYICDCCQETLNTFIDFINKYKETCSKLQERLKVCSPNKNNPTLDIVKQENIDNEDYEDIVYLDDNSFEGFESKPMKKDIKIDFEDGAHFIEKIKPMCKLKTREKNKIKKGSSIVMRTCKKYQISECKTIRKTSSQDADDWRPVRQSNKVAAKEFVKKKSLVQNKKKQRPTVEKKPQEHVLCKSCGEVFRSCEKLELHEKRKHIKHICPTCNVTLSSLSHLDRHVKRKHSDVKDFICDECGKGFAFQGDLTAHLQGVHAKIRRKQVHKKLPCKLCKKTFVTKTILLIHERSAHTGERPAVCTVCNASFFHEDYLKEHMRLHTGERPFECPVCGRGYAQRGNMKSHMRNHRISQLDQAMLDKIKPSWYKFMKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -