Basic Information

Insect: Coleophora flavipennella
Gene Symbol: -
Assembly: GCA_947284805.1
Location: OX369253.1:21066743-21072320[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 1.3 1.2e+02 4.8 1.1 8 23 46 61 45 61 0.93

2 20 0.026 2.4 10.2 0.2 2 23 73 94 72 94 0.96

3 20 0.003 0.28 13.1 1.0 1 23 104 126 104 126 0.98

4 20 0.038 3.6 9.6 1.8 3 23 163 183 161 183 0.95

5 20 0.00083 0.078 14.8 2.6 1 23 194 216 194 216 0.98

6 20 0.00011 0.01 17.6 0.2 1 23 224 246 224 246 0.98

7 20 0.011 1.1 11.3 0.1 2 23 266 288 265 288 0.97

8 20 0.36 34 6.5 0.5 1 23 306 328 306 328 0.88

9 20 0.97 91 5.2 3.9 1 23 335 357 335 357 0.98

10 20 0.098 9.2 8.3 5.7 2 23 368 390 367 390 0.97

11 20 0.0021 0.19 13.6 1.3 1 23 416 438 416 438 0.97

12 20 0.25 24 7.0 0.3 2 20 442 460 441 461 0.92

13 20 0.036 3.4 9.7 0.2 2 23 519 540 518 540 0.94

14 20 0.011 1 11.3 1.2 3 23 548 568 546 568 0.96

15 20 0.013 1.3 11.0 0.9 2 23 579 601 578 601 0.95

16 20 0.97 91 5.2 5.1 2 23 618 636 618 636 0.87

17 20 0.17 16 7.6 1.7 2 21 640 659 639 660 0.94

18 20 0.16 15 7.7 0.5 2 23 709 730 708 730 0.94

19 20 0.0067 0.63 12.0 1.0 2 23 741 763 740 763 0.96

20 20 0.18 17 7.5 5.1 1 21 800 820 800 821 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	1.3	1.2e+02	4.8	1.1	8	23	46	61	45	61	0.93
2	20	0.026	2.4	10.2	0.2	2	23	73	94	72	94	0.96
3	20	0.003	0.28	13.1	1.0	1	23	104	126	104	126	0.98
4	20	0.038	3.6	9.6	1.8	3	23	163	183	161	183	0.95
5	20	0.00083	0.078	14.8	2.6	1	23	194	216	194	216	0.98
6	20	0.00011	0.01	17.6	0.2	1	23	224	246	224	246	0.98
7	20	0.011	1.1	11.3	0.1	2	23	266	288	265	288	0.97
8	20	0.36	34	6.5	0.5	1	23	306	328	306	328	0.88
9	20	0.97	91	5.2	3.9	1	23	335	357	335	357	0.98
10	20	0.098	9.2	8.3	5.7	2	23	368	390	367	390	0.97
11	20	0.0021	0.19	13.6	1.3	1	23	416	438	416	438	0.97
12	20	0.25	24	7.0	0.3	2	20	442	460	441	461	0.92
13	20	0.036	3.4	9.7	0.2	2	23	519	540	518	540	0.94
14	20	0.011	1	11.3	1.2	3	23	548	568	546	568	0.96
15	20	0.013	1.3	11.0	0.9	2	23	579	601	578	601	0.95
16	20	0.97	91	5.2	5.1	2	23	618	636	618	636	0.87
17	20	0.17	16	7.6	1.7	2	21	640	659	639	660	0.94
18	20	0.16	15	7.7	0.5	2	23	709	730	708	730	0.94
19	20	0.0067	0.63	12.0	1.0	2	23	741	763	740	763	0.96
20	20	0.18	17	7.5	5.1	1	21	800	820	800	821	0.95

Sequence Information

Coding Sequence: ATGGCGGCGAAATCCTATATGTTCGACAACCAAACTGTAACCAATCTAGGTGACGAGGGGGTGAGGTCGCAATCTAGAGAGCGGCGTATGTTAGTACTAATGTATATACTTTGTCGTAACATTGTCGTGTCGCCGCAGACGTTCCGGTTCCAGTGCCACTACAAGCTGCACATGCGCGCGCACTACCGCGACACGGAGCTGGACCCCAAGCACCTGACGTGCCCCATCTGCCAGCGCCGCTCCAAGAACCTGCGCGCCGCCCTGGCGCACATGAACTACCACAAGCAGACGCGCTTCCAGGCGGGCGACTACCAGTGCTCCATCTGCAAGCGCGTGTTCCAGTACCGCAAGGTGTACCTCTCTCACATGGCCATCCACTACAAGCGCGGCGAGGGCACGGACGCGGTGGTGGGCGACATCCCGCGAGTGGGCACCGGTGGCACCGGCGGCACCGTGGGCGCCCTCCAGCCCGACAACCCGCTCGCCTGCCCGCAGTGCGGCAAGGTGTGCGACTCGGAGAACTCGCTCAAGTGTCACGTGCGCTGGCACACGTCGAAGTCCTCGCTGTTCGGCTCGCGCTACGAGTGCTACGTTTGTCACGTGGTGTTCACCAACAAGCGCCGGCTGGAGCTCCACACGCGCAGCCACTACGAGTCCGCCGACGGACCCTACAAGTGCGGGGTGTGCGGCAAGGGTTACATCGACGAGGACTACTACCGCCGCCACGTCAAGGGGCACAACTTCGACAACCAGAGCCACAAGAAGCGGCTGGAGAAGCTGCGCCGGAACAAAGTCAAGTGCCCGATTTGTCCGCGGTACTACCCGGATCTAGTCAAGCTGATCGGACACTTGAAGCGCACGCATCCGGAGAGCAAGATGATCAAACAGGATCCGGACGCGCCTCCTCCCGATTACTTCACTTGTAAGCTGTGCAATAAAATCTTTTTGGAGGAGCGGCGGTTGCGCGCCCACGAGGCGTCCCACGCGCGCAAGCCGACGCACTACAAGTGTCGCTACTGCGGCTTCAAGACGCCGTCGCTCAAGAACCACAACATTCACGTGAAGCGCCACCTGTACATCAAGCACTTCGACAAGCCGCTGCAGTGCACGCACTGCGAGGAGACCTTCCTGCGCCACTGCGACCTCAACCAGCATCTGCAAACGGCGCACGACATTAACGAGAAAACATATATCGAGCAGAGAGTGCCTGTGCCCTTGCGCAAGAAGGGAGGGCCACTGAAGGAGTTCCAGTGCGAGATCTGCCACAAGCTGCTCGCCAGCCGAGGCAACTTCGAGCGCCACCTCGACTATCACAACACACTACGCTGCAACTACTGCTTTGAATACTTCAGCAATCTGAAATTCCTCGAGGGACACTTGGCATTCAGCTGCGACAAGAAGAATTTGATTGGCGAGACAGAGGTGTACCCAAAGAAGGTGAAGTGCCACGTGTGTTACAAACCCTTCCATCTGCAAGTCAAGCTGGATTGCCATCTGCGGACACAACACGATATACACGTGACCAAGGAGTCATCGGAAGGCAGGAGAGATATCGTCTGCGACTACTGCTTCAGAGTGTTCGAGAACGACTATGCGCTGAGCATGCACAAGATATACCATCGCACTATAGGCTACTACGGCTGCCTGTACTGCCCGCGCAAGTTCAACACTCTCACTCTCTACCGCAAGCACAAGAACGCGCATCTGGCGCAGCTGAACGTCGACAACCCCACCAAGTGCGAACACTGCGACGAGACCTTCGTTGCGTTCCGCGAGATGATCTACCACATGCGCGATGAACACGGCGATGACAAAGAATGGAGCGTACTGCCAAAAGAGTCCATCGAGGAGGAGTGTCATATCTGCAAGAAGACCTTCGTCAACCTACACCGCCATCTCAGCTACCACGAGGATAATAAATGCAAGAAGTGCGGGGAATACTTCTTCTCGCGTGTCGACTACGACCAGCACATTTGTAGCATCGAAAGCGACGACGAAGGAGCCGCTGGCGACGAGGAAAACCCTGACCGACCCAGATATGAGGAGTGCCCCTTCTGCTTCAAGCAGATCACTAAAAACACGAAGAAAAAGCATGAAATAATCCATAAAACATCTGGTGCCATTTCCTGCCGCTTCTGTCCACTCAAGTTCAAAACCATGGACGCTTTCAATATCCACGCGTTTTCGCATCGCAGCCGCAAGTACAACATCAAACCGATAAAGTGTCGAGTGTGCCGCGAGAAGTTCACCAAATATGGGCCGTTCATGCGGCACATGAAGAGTGCACACAAGTCTACCAAGAAAGTCCACTACCGGGCTGTGATTCGCGCCGAACGCTGCGTAGTCTGCGGCGCGGAACATCCTAACTTACACAACCACTACCGCCACCATTTACAGCATCAGTGTCAAAGCTGTCGCAAGTATTTCACCTCGAGCCGCGCTTTCAGCCGCCACCAGTGTGGCCAGGAAGATGCTGACCCCTCCAAGGTGTTCACCAGTGATGAAAATCTCGACGCCCTCATCAAGTCCTACATACCTAAGGATGAGAAAAATGACGAGAAATTCTATGGCTACACTGACGATGAGGACGAAGATGAACCAGAACCAGAGCCAGAACCTGAAGCGCCTCCGCAGAACGACCAGTTGACGACAAATAAAGAACCTCTTCAAAATGGTCACGACACAGATAAAAGTCCTCCTACTGCAGAGAGTTTGGTGATGCAACCATTTGTGATATCAGATGTGCTATCATTGTATGAGAAAAAAGCGGAGCTGCTCGCACTGTATCAAAAGAAAGGAGCGCGGGAGACCCAGACGGTCGGCATGTTGATGAAGAAGGAGAAAGCCAAAACTAAACCAACCAAACAGAAAGAGAAAAAGAAAGAAGAGGTAAACAAAATGGACGATCCTGACAGTGATGTGGAGATTGTGGATCTGTCGGATGAAGAGCCCGCCCCTTGCCCCATCATCTCACTCGACGATGACTGA
Protein Sequence: MAAKSYMFDNQTVTNLGDEGVRSQSRERRMLVLMYILCRNIVVSPQTFRFQCHYKLHMRAHYRDTELDPKHLTCPICQRRSKNLRAALAHMNYHKQTRFQAGDYQCSICKRVFQYRKVYLSHMAIHYKRGEGTDAVVGDIPRVGTGGTGGTVGALQPDNPLACPQCGKVCDSENSLKCHVRWHTSKSSLFGSRYECYVCHVVFTNKRRLELHTRSHYESADGPYKCGVCGKGYIDEDYYRRHVKGHNFDNQSHKKRLEKLRRNKVKCPICPRYYPDLVKLIGHLKRTHPESKMIKQDPDAPPPDYFTCKLCNKIFLEERRLRAHEASHARKPTHYKCRYCGFKTPSLKNHNIHVKRHLYIKHFDKPLQCTHCEETFLRHCDLNQHLQTAHDINEKTYIEQRVPVPLRKKGGPLKEFQCEICHKLLASRGNFERHLDYHNTLRCNYCFEYFSNLKFLEGHLAFSCDKKNLIGETEVYPKKVKCHVCYKPFHLQVKLDCHLRTQHDIHVTKESSEGRRDIVCDYCFRVFENDYALSMHKIYHRTIGYYGCLYCPRKFNTLTLYRKHKNAHLAQLNVDNPTKCEHCDETFVAFREMIYHMRDEHGDDKEWSVLPKESIEEECHICKKTFVNLHRHLSYHEDNKCKKCGEYFFSRVDYDQHICSIESDDEGAAGDEENPDRPRYEECPFCFKQITKNTKKKHEIIHKTSGAISCRFCPLKFKTMDAFNIHAFSHRSRKYNIKPIKCRVCREKFTKYGPFMRHMKSAHKSTKKVHYRAVIRAERCVVCGAEHPNLHNHYRHHLQHQCQSCRKYFTSSRAFSRHQCGQEDADPSKVFTSDENLDALIKSYIPKDEKNDEKFYGYTDDEDEDEPEPEPEPEAPPQNDQLTTNKEPLQNGHDTDKSPPTAESLVMQPFVISDVLSLYEKKAELLALYQKKGARETQTVGMLMKKEKAKTKPTKQKEKKKEEVNKMDDPDSDVEIVDLSDEEPAPCPIISLDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -