Cfla002254.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- -
- Assembly
- GCA_947284805.1
- Location
- OX369308.1:52752432-52755567[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.19 18 7.4 7.5 1 23 52 74 52 74 0.97 2 12 0.31 29 6.7 0.4 3 23 141 162 139 162 0.89 3 12 0.0053 0.5 12.3 0.9 2 23 192 214 191 214 0.94 4 12 0.0041 0.39 12.6 1.6 1 23 287 309 287 309 0.96 5 12 0.085 8 8.5 0.1 2 23 335 357 334 357 0.94 6 12 0.011 1.1 11.3 6.6 1 23 379 402 379 402 0.96 7 12 0.00031 0.029 16.2 0.8 3 23 409 430 408 430 0.97 8 12 0.0013 0.12 14.2 2.7 1 23 435 458 435 458 0.92 9 12 0.0025 0.23 13.3 0.4 1 23 462 485 462 485 0.96 10 12 0.00016 0.015 17.1 3.5 1 23 489 512 489 512 0.97 11 12 0.00021 0.019 16.7 0.3 2 23 519 540 518 540 0.96 12 12 0.0057 0.54 12.2 0.4 1 23 546 569 546 569 0.92
Sequence Information
- Coding Sequence
- ATGATCGTCATAGACCACAATCGTATGTTTAGTAAAGAAGCGGCAGACCTTACCGGGTCGGTAAAGGAAGAGAGCCGCGCAATTCGTAAGAGAAGTAACCTTATCACACTTGTCAACTATACCACAATCAAACCGTTCAGATGGCTGAACCAGTATAAGTGCTTCTTCTGCCATTTCAACACTAAGACCTATAGCTACTTAAGAAAGCATTATGCACAACATGTCTATAGTGAATTTGATGACCAATCACTCAAAGATCTCACCGTGAAACTAGACGTATCGAACATCTCTTGCGAGCTTTGCGATGTAGGTTTCAATACTGTAGATGCGGTGGTATGTCACTTGGTAACAAATCATGGTGTAAAGTACGATCCGAATGTCAATATGAACCTAGAAATGTACCGCTTATGTGATTTAGCTTGCTTGATATGCGGCCTGACATTTAAATATTTCCAAAAACTAGCATTCCACTTGAAGAACGAACATCAAGCTCTAACTTTCTACCCTGAATTTTATGGATTATCTTTAAAACATTTAAATACAATGAAAACAGAAAATTCGACAACGGAAATCAAGTGCTCCAAGTGCCAACTTCAATTCAATAGCATAGGTTCATTGAAGAAACATAAAATAATAAATCACGCAGAATCTAGTCAGTTTGCAAACCAATCTGTGAGGAGCAAAGCTTCGATGAAATTAGAGGTCACAGACAAAGAAAAAAAGGCACAAACAAAATTACAGCCAAAAGAAGATGTCACAGACGACAAGGAGTGTATTACGACGGAAGCCGTAAAAAGTAACATAAAATGCATATTGAAAATGACAACTACCTTACCGTTTAAGTTTTATAAGAATCTCTACATGTGCTTCTACTGCCCTGAAATGTTTCGGGAGCACGATGAACTCTTGACTCATTCAAACAACCACACCGATGCGGATGTAGATGTATTGCCTTTTCCGTATGGCAAGTCTACAACAGTAAAAGTTGATGTAACAATACTTTCCTGCAGGGTTTGCGATCAACATTTTGACGACTTGGACTCGATCGCTGATCACCTTGTCACTGCACACCGAGCTACTTATAACCCGCAAATCAAAAATTTGTTCCATCCCTATAAACTCACAAAAGACGATCACAGTTGCTTACATTGCAAAAAAACGTTTAAATACTTTCAGTTACTGTTAAAGCATGTCAAAAGTGACCATTTACCTAAAACTTTGCTGTGTTCCCATTGCGGTATGCAGTTTCAATCAAGATCATCACTCTCGGTTCATATCAATATCGTCCATAAAGTAAAGGGGTACAAATGTAACATTTGTTCTGAGGTGTTCACCACATTTCATAGGTTAAAAACACACAAGTCTGCTATTCATAAAAGCGAATTTCCCTGTAGGAAATGTCGCGAAAAGTTCCCAACAAGCTATGCCGCTGAAAAACATATGTTGAACGTGCACAATATAGGTTATATCTGCAAAGATTGTGGTCACGCATTTGTTAGGAAGTCTTTTATGGTAAACCACCACAGACGGGTACATTTAAAAGAGAAAGAGATTCCTTGTAATATTTGCAACAAGATGTTCTTTAACACGGCACTACTGAGCACACACATGGTGAAGCACACGCGAGAAAGACAATACACTTGTGACACGTGCGGCAAAAGCTTCCTGTGGAAGAAGAATCTCAATCAGCACGTTGACGTCGTCCATAAAAATGTAAAACACGCCAAGTCTGCGGCGGCGGTGTCCAGCACAAAATAA
- Protein Sequence
- MIVIDHNRMFSKEAADLTGSVKEESRAIRKRSNLITLVNYTTIKPFRWLNQYKCFFCHFNTKTYSYLRKHYAQHVYSEFDDQSLKDLTVKLDVSNISCELCDVGFNTVDAVVCHLVTNHGVKYDPNVNMNLEMYRLCDLACLICGLTFKYFQKLAFHLKNEHQALTFYPEFYGLSLKHLNTMKTENSTTEIKCSKCQLQFNSIGSLKKHKIINHAESSQFANQSVRSKASMKLEVTDKEKKAQTKLQPKEDVTDDKECITTEAVKSNIKCILKMTTTLPFKFYKNLYMCFYCPEMFREHDELLTHSNNHTDADVDVLPFPYGKSTTVKVDVTILSCRVCDQHFDDLDSIADHLVTAHRATYNPQIKNLFHPYKLTKDDHSCLHCKKTFKYFQLLLKHVKSDHLPKTLLCSHCGMQFQSRSSLSVHINIVHKVKGYKCNICSEVFTTFHRLKTHKSAIHKSEFPCRKCREKFPTSYAAEKHMLNVHNIGYICKDCGHAFVRKSFMVNHHRRVHLKEKEIPCNICNKMFFNTALLSTHMVKHTRERQYTCDTCGKSFLWKKNLNQHVDVVHKNVKHAKSAAAVSSTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -