Basic Information

Insect: Coleophora flavipennella
Gene Symbol: -
Assembly: GCA_947284805.1
Location: OX369258.1:2123612-2138101[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.089 8.4 8.4 1.4 1 23 516 539 516 539 0.97

2 17 0.043 4.1 9.4 2.7 2 23 548 569 547 569 0.97

3 17 2.8 2.6e+02 3.7 0.6 2 23 573 594 572 594 0.91

4 17 0.062 5.9 8.9 4.5 2 21 616 635 615 636 0.94

5 17 0.0028 0.27 13.2 0.2 1 23 667 690 667 690 0.96

6 17 0.0087 0.82 11.6 0.2 1 23 695 718 695 718 0.96

7 17 0.75 71 5.5 0.0 3 21 724 742 723 743 0.92

8 17 0.006 0.57 12.1 0.4 2 23 752 774 751 774 0.89

9 17 0.018 1.7 10.6 2.5 1 23 777 800 777 800 0.94

10 17 0.0005 0.047 15.5 0.2 2 23 814 835 813 835 0.97

11 17 3.2 3e+02 3.5 4.6 1 20 839 858 839 866 0.90

12 17 0.0016 0.15 13.9 1.3 3 23 885 905 883 905 0.96

13 17 0.025 2.3 10.2 0.1 1 23 948 971 948 971 0.97

14 17 0.0012 0.11 14.3 2.5 1 23 977 1000 977 1000 0.97

15 17 7.4e-05 0.007 18.1 0.7 2 23 1007 1028 1006 1028 0.98

16 17 0.0046 0.43 12.5 0.7 1 23 1034 1056 1034 1056 0.96

17 17 0.01 0.99 11.4 1.9 2 23 1063 1085 1063 1085 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.089	8.4	8.4	1.4	1	23	516	539	516	539	0.97
2	17	0.043	4.1	9.4	2.7	2	23	548	569	547	569	0.97
3	17	2.8	2.6e+02	3.7	0.6	2	23	573	594	572	594	0.91
4	17	0.062	5.9	8.9	4.5	2	21	616	635	615	636	0.94
5	17	0.0028	0.27	13.2	0.2	1	23	667	690	667	690	0.96
6	17	0.0087	0.82	11.6	0.2	1	23	695	718	695	718	0.96
7	17	0.75	71	5.5	0.0	3	21	724	742	723	743	0.92
8	17	0.006	0.57	12.1	0.4	2	23	752	774	751	774	0.89
9	17	0.018	1.7	10.6	2.5	1	23	777	800	777	800	0.94
10	17	0.0005	0.047	15.5	0.2	2	23	814	835	813	835	0.97
11	17	3.2	3e+02	3.5	4.6	1	20	839	858	839	866	0.90
12	17	0.0016	0.15	13.9	1.3	3	23	885	905	883	905	0.96
13	17	0.025	2.3	10.2	0.1	1	23	948	971	948	971	0.97
14	17	0.0012	0.11	14.3	2.5	1	23	977	1000	977	1000	0.97
15	17	7.4e-05	0.007	18.1	0.7	2	23	1007	1028	1006	1028	0.98
16	17	0.0046	0.43	12.5	0.7	1	23	1034	1056	1034	1056	0.96
17	17	0.01	0.99	11.4	1.9	2	23	1063	1085	1063	1085	0.97

Sequence Information

Coding Sequence: ATGCAGAACGGATTAGAAAACAGACTAGAAGCTCTTTTTTTCTATGCTATGGGTGAAGGGGGGCGACAATGTATCGGATTAGAGATGGCCATTATTGAGACTAATGTCACCCAGTGTGGTGAAATATCGGGTGCTTTGTTGCAGGCTGCTGCAGACATTCGAGCACGTTGCACCGGCGACCACACCAAGCCGTTTCGAGCGCCCGCTGGACCGGAGTTGCTGGCGCCACTCCCTACGGTCACTGTGCCTACCTGCTCAGGTGACTACGCTGACTGGCCACGCTTCAGAGTCCTGTTTGATAGCGTGGTCCATTCACGCTCGGCTTTCCAGCCGTCGTACAAGATGGCGCAGCTGCTGGCGCGCCTTGATGGGGAGCCCCACGATTTTGTGAGTCACCTATATGTCTCCGATGATAATTATGAGACAGCGAGTCACCTGCTCATAGAGCGATATGAGAATCGGCGTCTCATAATCACTAGCCTTTTGGATAAGGTGTTTGCGGTAGCTCGCGTGACTCGCGTGGTGGACATCCGGCAGAGGTTCCTCAATCCCTTCAACGTGGCAGTCAACGCACTGGAGCATCAGAACCTGCCCATATCAACAAGCTCAGTCGACTACGTGCTAGTGCACCTAATCCTCCGCAGGTTGCCGAGCGACGTTGTAGCTCGTTTTGAGAAACTCCACGGAGGCGACTTAGCAGATTTGTGCGTATTCGTATGTCTTGCCACAGAGGATGTCCACTTGGAGCTTGTGGCCGATATATGTACTTATTCAAAATATGTGCAAATTACACTCTTTCTAAACCTAAATATGAAGAAAGAAGAATACGAAGAGTATACAATCATCAATAACAATGCTGATTTCAACCAAACGCTCTGTCTCAATATTGATTCACCATCACTTAACAAGAAAATGTACAACTATCACGATGGAAATTATATCAGTCGCAAGTTGAATCACATTATGTACTCAGCTTGCTATTGTGGACTCTGCATTGAAAAAAATGAGGAATTGACATCAATATACACTCCGTTTGAAATTGGCAGTGTAGGGAGTACAATGGTTGATGACATGCTGACTGAAGTATTTCATGATACTGAAGATTTACTGGCCAGCAACTTCATTTGTAATCAATGCTTAGACAAAACAGTGCAGTCATACATTTTCATAAAAAACACAAAACAATCAACAAAGGTCATGAGTGATTACATAAATAGTTTTGTATTAAAAGTTGATACTTTAGAAGAACAGATAGATGAAAACCTAGACTACAGTCAGACTAAATTTGTGATTTTAATAGAACCAAATGAAGTAAATTCTGTAGATGATGTTAATACGAAAGAAGAAGAAGAATGGATCGATCTTGGAGAATCTTACAATGATAACACAGTAGTAACTAATGAAGAAACAGACGAGCTTACTCAAACAATACAAAAACTTCCAAGAAATGATGAGCCTGTAGGTATGCTGCCTGATCCAATTCCGAAAAAGAATATTTACTTAGAGGATGACAAAGTAATGCCAGTAAAAACTAAAAATAATGCATTCAAATGCAGCATTTGTGATGTAGTTCTGATTACGTTCAAAGCTTGGAAAAAGCATGAACACACATATCATAAAGTAGAAGGAAATAAGCCAATGACATGTCAGATTTGTTTCAAAGTCATAGCAAATAAAAGGTGTTTGATCCAACACTACAAAAGACATAACAGAAGTAAATGTAGACACTGCAATATTGTTATACCAAACGCATACTTAAAATCACATATGATGGACGAACATGGTCTAGAACTGAAAGAACATAAGACTTTAAGACATGAAGACCCAGAAAAAGTTGACGAAAATCAATGTGAGATGTGTTTCAAGCATTTTAATGATCAAGTAGAATTAAACTCGCATCATTGTAGATTCAGATGCACAGAATGCTCTGATCTAGTGTGTATTCATCAGAAATATTTGATTTCATTTCGTCAGCAGGCCCTGAATAGGAGCACAAAATTCATTTGTCCAGATTGTGATTATGTTTGCATTAAAAAGGACCTATTAATCGGACATGCAAACAAAGCTCACTTGGGCCATCATTATGAATGCGAGCTTTGTGGTGCCGAATACTATTCTAAATCTACACTGAAATTCCATATGGGTACAGCTCATGTGCAACTGAATATTTGTGAATATTGCGACAGTGAATTCAAAGATGAAGTAGAATACAGCATTCATGTTCAGCTGTGCGAAACTGAGAAAAGAGATGTTGAATGCTCATTTTGCAAAGCATCCTTTGAAACCCAAGAGCAATTAAGAAACCACGAGGACCTAAGGCACAAGATGTTTCCTTGTGGAATGTGCAATAAAACATTCAAAACTGAACGTAAACAAAGAGAGCATACTACTAAAACTCACAGCGGTTTGGAACGATTAAGGAAAAGGAAGAACAATCTTCAATGCCCAATTTGCAATAGAATTTTTGATCTTCGAGGGGATTACACAAGACATGTGACGACACACGGTCCAATATACAACTGCAGAGATTGCCGCCAACAATTTGATGACCGTAGATTATTCTTACGACATTGCCTGCGTGCGCATAAGATAAAACATTTGAGACAAGCAGAAAGGCAAAAGGCAGTCAAAAAGGAAAAACTGGCATTAATATGTGACGCTTGTGGCAAAGTCTGTACCTCCCGGGAAATGTTCTCAGTACATAGAAGAACGCATATGGAACCGGTGTGTTGTACAATTTGTAATAAGATGGTAAATGCAATATCGATATATTCGCACATGAGATGTCACAAAGAACAAAGTGGTTTAGTAAAGAAACGAATTTACAGACCAGGTAAAAAGTTCAAGTGTGATGACTGTGGTTTTGCAGCGGTCAACCGTCAGCTAATCGAAACCCATATAAACCGTGTACACTTGAAAATCAAACCGTATGTGTGCGAGTTATGCGGTGTTGCTTACTGTTCAAAATGTCTATTGAAGGAGCACATGAATAACAATCATATTGAAGAAAGGTGGCAGAAATGTGAGCTATGTGGTAAAGTTATACGTAGCAAGATAGGTTTAAAGAAACACATGATGAAGCATACCGGTGAAAAGTCTCACATTTGCGAGACATGCGGACAAGGCTTCATAACGATAACACAGTTATTAGAACATTCGAGAAGGCATACGGATGGGAAACAGGCGAAGTGCCCGATTTGCGAGTCTCAGTTTTTCTCGCTGAGGCATTTAAGGCTGCACATTAAGCGAGTTCACTGGAAGTACGAAAATAAGGCTTTTAACCCAAAGTTGGTTAAGGGCCTGGAGGGACACGAATATATATTCCATGATAAACGACGTGCTGTTGTTGAGTAA
Protein Sequence: MQNGLENRLEALFFYAMGEGGRQCIGLEMAIIETNVTQCGEISGALLQAAADIRARCTGDHTKPFRAPAGPELLAPLPTVTVPTCSGDYADWPRFRVLFDSVVHSRSAFQPSYKMAQLLARLDGEPHDFVSHLYVSDDNYETASHLLIERYENRRLIITSLLDKVFAVARVTRVVDIRQRFLNPFNVAVNALEHQNLPISTSSVDYVLVHLILRRLPSDVVARFEKLHGGDLADLCVFVCLATEDVHLELVADICTYSKYVQITLFLNLNMKKEEYEEYTIINNNADFNQTLCLNIDSPSLNKKMYNYHDGNYISRKLNHIMYSACYCGLCIEKNEELTSIYTPFEIGSVGSTMVDDMLTEVFHDTEDLLASNFICNQCLDKTVQSYIFIKNTKQSTKVMSDYINSFVLKVDTLEEQIDENLDYSQTKFVILIEPNEVNSVDDVNTKEEEEWIDLGESYNDNTVVTNEETDELTQTIQKLPRNDEPVGMLPDPIPKKNIYLEDDKVMPVKTKNNAFKCSICDVVLITFKAWKKHEHTYHKVEGNKPMTCQICFKVIANKRCLIQHYKRHNRSKCRHCNIVIPNAYLKSHMMDEHGLELKEHKTLRHEDPEKVDENQCEMCFKHFNDQVELNSHHCRFRCTECSDLVCIHQKYLISFRQQALNRSTKFICPDCDYVCIKKDLLIGHANKAHLGHHYECELCGAEYYSKSTLKFHMGTAHVQLNICEYCDSEFKDEVEYSIHVQLCETEKRDVECSFCKASFETQEQLRNHEDLRHKMFPCGMCNKTFKTERKQREHTTKTHSGLERLRKRKNNLQCPICNRIFDLRGDYTRHVTTHGPIYNCRDCRQQFDDRRLFLRHCLRAHKIKHLRQAERQKAVKKEKLALICDACGKVCTSREMFSVHRRTHMEPVCCTICNKMVNAISIYSHMRCHKEQSGLVKKRIYRPGKKFKCDDCGFAAVNRQLIETHINRVHLKIKPYVCELCGVAYCSKCLLKEHMNNNHIEERWQKCELCGKVIRSKIGLKKHMMKHTGEKSHICETCGQGFITITQLLEHSRRHTDGKQAKCPICESQFFSLRHLRLHIKRVHWKYENKAFNPKLVKGLEGHEYIFHDKRRAVVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -